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| Mutant Information |
|---|
| Mutant Name | FN-110 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-110 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26367854 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4033708 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 4531380 | C-A | Homo | INTRON | |
| SBS | Chr2 | 6287845 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g085000 |
| SBS | Chr2 | 13370498 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 15461145 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9360123 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16020188 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32902672 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36038432 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 1606999 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3487165 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 3853364 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5641963 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 15734641 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 18876568 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 28692045 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 23936521 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23936522 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24223103 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 11495053 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 25772162 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9750155 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15421365 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12569394 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 25238667 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9582614 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11418468 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 19437860 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23718773 | G-T | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 624737 | 624739 | 2 | OsKitaake03g010000 |
| Deletion | Chr6 | 1051548 | 1051553 | 5 | |
| Deletion | Chr8 | 2551961 | 2551962 | 1 | |
| Deletion | Chr11 | 2875462 | 2875463 | 1 | OsKitaake11g040700 |
| Deletion | Chr2 | 3487697 | 3487718 | 21 | |
| Deletion | Chr4 | 7618276 | 7618282 | 6 | |
| Deletion | Chr7 | 8542130 | 8542132 | 2 | |
| Deletion | Chr7 | 8543037 | 8543042 | 5 | |
| Deletion | Chr2 | 9067357 | 9067361 | 4 | |
| Deletion | Chr2 | 12280063 | 12280064 | 1 | |
| Deletion | Chr8 | 12306001 | 12373000 | 66999 | 3 |
| Deletion | Chr8 | 14861192 | 14861193 | 1 | |
| Deletion | Chr10 | 18831770 | 18831775 | 5 | |
| Deletion | Chr12 | 19100248 | 19100249 | 1 | |
| Deletion | Chr12 | 20403450 | 20403451 | 1 | |
| Deletion | Chr5 | 21710126 | 21710127 | 1 | |
| Deletion | Chr4 | 26903357 | 26903365 | 8 | OsKitaake04g195300 |
| Deletion | Chr1 | 32058312 | 32058334 | 22 | |
| Deletion | Chr3 | 34115861 | 34115865 | 4 | |
| Deletion | Chr2 | 34787447 | 34787449 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 23501606 | 23501609 | 2 | |
| Insertion | Chr6 | 26223987 | 26223991 | 3 | |
| Insertion | Chr11 | 8173834 | 8173836 | 1 | |
| Insertion | Chr12 | 17238951 | 17238954 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 25712846 | 25793877 |