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Mutant Information

Mutant Name	FN-111 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-111 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19957321 C-A Hetero INTERGENIC
SBS Chr1 21028806 A-G Homo INTRON
SBS Chr1 39292680 C-A Hetero INTRON
SBS Chr2 1121356 G-T Homo INTERGENIC
SBS Chr2 3837305 G-C Homo INTERGENIC
SBS Chr2 15055688 C-T Homo INTERGENIC
SBS Chr2 23068089 G-T Homo INTERGENIC
SBS Chr2 25984444 G-A Hetero INTERGENIC
SBS Chr2 34607647 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g360300
SBS Chr4 8071316 C-T Hetero INTERGENIC
SBS Chr4 24495457 T-C Hetero INTERGENIC
SBS Chr6 14646146 A-G Hetero INTERGENIC
SBS Chr6 14646147 T-A Hetero INTERGENIC
SBS Chr6 20155231 T-A Hetero INTERGENIC
SBS Chr7 11226057 G-A Hetero INTERGENIC
SBS Chr7 11226058 C-T Hetero INTERGENIC
SBS Chr8 10177185 G-A Hetero INTERGENIC
SBS Chr8 13740992 A-G Hetero INTERGENIC
SBS Chr8 15971041 T-A Hetero INTERGENIC
SBS Chr8 19873995 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g146400
SBS Chr9 8622768 C-T Hetero INTERGENIC
SBS Chr9 11427296 T-C Hetero INTERGENIC
SBS Chr10 23317674 T-A Homo UTR_3_PRIME
SBS Chr12 11887536 T-A Homo INTERGENIC
SBS Chr12 16099920 G-T Homo INTERGENIC
SBS Chr12 26660034 C-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 419262 419269 7
Deletion Chr2 2071852 2071855 3
Deletion Chr2 4668273 4668285 12
Deletion Chr2 11269001 11274000 4999 OsKitaake02g131100
Deletion Chr12 12026786 12026791 5
Deletion Chr8 12398998 12398999 1
Deletion Chr2 13515774 13515782 8
Deletion Chr4 17253871 17253872 1
Deletion Chr6 20622542 20622544 2
Deletion Chr7 28346703 28346705 2
Deletion Chr1 35763136 35763137 1 OsKitaake01g378700

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14631562 14631614 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19957321	C-A	Hetero	INTERGENIC
SBS	Chr1	21028806	A-G	Homo	INTRON
SBS	Chr1	39292680	C-A	Hetero	INTRON
SBS	Chr2	1121356	G-T	Homo	INTERGENIC
SBS	Chr2	3837305	G-C	Homo	INTERGENIC
SBS	Chr2	15055688	C-T	Homo	INTERGENIC
SBS	Chr2	23068089	G-T	Homo	INTERGENIC
SBS	Chr2	25984444	G-A	Hetero	INTERGENIC
SBS	Chr2	34607647	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g360300
SBS	Chr4	8071316	C-T	Hetero	INTERGENIC
SBS	Chr4	24495457	T-C	Hetero	INTERGENIC
SBS	Chr6	14646146	A-G	Hetero	INTERGENIC
SBS	Chr6	14646147	T-A	Hetero	INTERGENIC
SBS	Chr6	20155231	T-A	Hetero	INTERGENIC
SBS	Chr7	11226057	G-A	Hetero	INTERGENIC
SBS	Chr7	11226058	C-T	Hetero	INTERGENIC
SBS	Chr8	10177185	G-A	Hetero	INTERGENIC
SBS	Chr8	13740992	A-G	Hetero	INTERGENIC
SBS	Chr8	15971041	T-A	Hetero	INTERGENIC
SBS	Chr8	19873995	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g146400
SBS	Chr9	8622768	C-T	Hetero	INTERGENIC
SBS	Chr9	11427296	T-C	Hetero	INTERGENIC
SBS	Chr10	23317674	T-A	Homo	UTR_3_PRIME
SBS	Chr12	11887536	T-A	Homo	INTERGENIC
SBS	Chr12	16099920	G-T	Homo	INTERGENIC
SBS	Chr12	26660034	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	419262	419269	7
Deletion	Chr2	2071852	2071855	3
Deletion	Chr2	4668273	4668285	12
Deletion	Chr2	11269001	11274000	4999	OsKitaake02g131100
Deletion	Chr12	12026786	12026791	5
Deletion	Chr8	12398998	12398999	1
Deletion	Chr2	13515774	13515782	8
Deletion	Chr4	17253871	17253872	1
Deletion	Chr6	20622542	20622544	2
Deletion	Chr7	28346703	28346705	2
Deletion	Chr1	35763136	35763137	1	OsKitaake01g378700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes