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| Mutant Information |
|---|
| Mutant Name | FN-112 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-112 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7014381 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g088000 |
| SBS | Chr1 | 31550991 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 38720675 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 803958 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g011200 |
| SBS | Chr2 | 10280343 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22937344 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7665198 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 32228730 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 1606536 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 20051419 | C-T | Homo | INTRON | |
| SBS | Chr4 | 26606305 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g191300 |
| SBS | Chr4 | 32098876 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g255100 |
| SBS | Chr5 | 10322682 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20421967 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 25987936 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g229300 |
| SBS | Chr6 | 19836266 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 8530046 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18625661 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10762764 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18112720 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 22149576 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 9970737 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16455643 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14674067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15122134 | T-C | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2163124 | 2163125 | 1 | |
| Deletion | Chr11 | 3118532 | 3118533 | 1 | |
| Deletion | Chr10 | 5276001 | 5285000 | 8999 | OsKitaake10g037801 |
| Deletion | Chr1 | 9464022 | 9464024 | 2 | OsKitaake01g121350 |
| Deletion | Chr7 | 16381069 | 16381159 | 90 | |
| Deletion | Chr2 | 17482008 | 17482013 | 5 | |
| Deletion | Chr3 | 17538124 | 17538125 | 1 | |
| Deletion | Chr3 | 20877336 | 20877339 | 3 | |
| Deletion | Chr1 | 20969281 | 20969287 | 6 | |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 23257983 | 23578697 | OsKitaake07g206800 |
| Inversion | Chr7 | 23257988 | 23578704 | OsKitaake07g206800 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 5284513 | Chr2 | 6254170 | 2 |
| Translocation | Chr10 | 5285213 | Chr2 | 6254159 | 2 |