Search Kitaake

Mutant Information

Mutant Name	FN-113 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-113 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32220813 T-A Homo UTR_3_PRIME
SBS Chr2 8403955 A-T Hetero INTERGENIC
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 29810262 A-T Homo INTRON
SBS Chr5 2219375 A-G Hetero UTR_3_PRIME
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr6 10514926 G-A Hetero INTERGENIC
SBS Chr6 11100062 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g123100
SBS Chr6 21750575 A-T Homo INTERGENIC
SBS Chr7 9076470 G-A Hetero INTERGENIC
SBS Chr7 22435795 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 22593002 C-A Hetero INTRON
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 23555943 G-T Hetero INTERGENIC
SBS Chr9 11023532 C-T Hetero INTERGENIC
SBS Chr9 14491464 A-T Homo INTERGENIC
SBS Chr10 7366373 C-T Hetero INTERGENIC
SBS Chr10 9815889 A-T Hetero INTERGENIC
SBS Chr11 24807073 T-A Hetero INTERGENIC
SBS Chr12 24476462 C-T Hetero STOP_GAINED OsKitaake12g197400

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2651001 2741000 89999 9
Deletion Chr9 5445955 5446045 90
Deletion Chr4 10248875 10248876 1
Deletion Chr6 21750891 21750900 9
Deletion Chr3 24859001 24868000 8999 2
Deletion Chr4 25893293 25893294 1
Deletion Chr1 27201192 27201198 6
Deletion Chr7 28373707 28373710 3
Deletion Chr1 33709856 33709863 7
Deletion Chr2 36021883 36021884 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29759127 29759129 1 OsKitaake01g292400
Insertion Chr2 27077297 27077300 2
Insertion Chr4 26151787 26151791 3
Insertion Chr7 18906381 18906385 3
Insertion Chr10 8267973 8267982 8

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16532582 16532800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12689562 Chr10 16328659 OsKitaake10g110100
Translocation Chr11 13847146 Chr10 16328655 OsKitaake10g110100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32220813	T-A	Homo	UTR_3_PRIME
SBS	Chr2	8403955	A-T	Hetero	INTERGENIC
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	29810262	A-T	Homo	INTRON
SBS	Chr5	2219375	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr6	10514926	G-A	Hetero	INTERGENIC
SBS	Chr6	11100062	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g123100
SBS	Chr6	21750575	A-T	Homo	INTERGENIC
SBS	Chr7	9076470	G-A	Hetero	INTERGENIC
SBS	Chr7	22435795	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	22593002	C-A	Hetero	INTRON
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	23555943	G-T	Hetero	INTERGENIC
SBS	Chr9	11023532	C-T	Hetero	INTERGENIC
SBS	Chr9	14491464	A-T	Homo	INTERGENIC
SBS	Chr10	7366373	C-T	Hetero	INTERGENIC
SBS	Chr10	9815889	A-T	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Hetero	INTERGENIC
SBS	Chr12	24476462	C-T	Hetero	STOP_GAINED	OsKitaake12g197400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2651001	2741000	89999	9
Deletion	Chr9	5445955	5446045	90
Deletion	Chr4	10248875	10248876	1
Deletion	Chr6	21750891	21750900	9
Deletion	Chr3	24859001	24868000	8999	2
Deletion	Chr4	25893293	25893294	1
Deletion	Chr1	27201192	27201198	6
Deletion	Chr7	28373707	28373710	3
Deletion	Chr1	33709856	33709863	7
Deletion	Chr2	36021883	36021884	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16532582	16532800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes