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| Mutant Information |
|---|
| Mutant Name | FN-114 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-114 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9464265 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 9957735 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 16462091 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 16462093 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21396581 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 27498683 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31463643 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40277332 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 33768754 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 35788732 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23672579 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25868506 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 35697086 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 23185367 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27287194 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 7577490 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9896626 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16561112 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 16676793 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 729737 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g007200 |
| SBS | Chr6 | 789095 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 2797281 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 10363164 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4382523 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6363691 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 7641622 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17345965 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18373762 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 25932581 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1796473 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2423544 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 13401290 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 14528028 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27446449 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10346283 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12941568 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14227430 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14958733 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19331185 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21244587 | G-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 18326 | 18327 | 1 | |
| Deletion | Chr11 | 7277512 | 7277515 | 3 | |
| Deletion | Chr12 | 9712036 | 9712042 | 6 | |
| Deletion | Chr12 | 9766182 | 9766183 | 1 | |
| Deletion | Chr8 | 12107646 | 12107655 | 9 | |
| Deletion | Chr2 | 13817172 | 13817367 | 195 | |
| Deletion | Chr7 | 14030617 | 14030818 | 201 | OsKitaake07g121100 |
| Deletion | Chr2 | 18332282 | 18332285 | 3 | |
| Deletion | Chr5 | 19615432 | 19615536 | 104 | |
| Deletion | Chr4 | 20609392 | 20609394 | 2 | OsKitaake04g111000 |
| Deletion | Chr2 | 21543636 | 21543643 | 7 | |
| Deletion | Chr11 | 21657101 | 21657102 | 1 | OsKitaake11g171400 |
| Deletion | Chr4 | 35617402 | 35617404 | 2 | |
| Deletion | Chr2 | 36674877 | 36674878 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 26775776 | 26775779 | 2 | |
| Insertion | Chr10 | 1824468 | 1824470 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 19797782 | 19854687 | |
| Inversion | Chr10 | 19797791 | 19854691 | |
| Inversion | Chr4 | 30422620 | 30652226 | |
| Inversion | Chr4 | 30422676 | 30652232 |