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Mutant Information

Mutant Name	FN-115 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-115 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14508064 A-C Homo INTERGENIC
SBS Chr1 25019062 T-C Hetero INTERGENIC
SBS Chr1 25490919 C-T Hetero SPLICE_SITE_REGION
SBS Chr1 26660137 G-A Hetero INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 42249466 T-A Homo INTERGENIC
SBS Chr1 42920311 C-A Hetero UTR_3_PRIME
SBS Chr1 43362651 C-A Hetero INTERGENIC
SBS Chr2 16786012 T-C Hetero INTERGENIC
SBS Chr2 17669918 G-A Hetero INTERGENIC
SBS Chr3 4613511 T-C Homo INTRON
SBS Chr3 18358102 G-T Hetero INTERGENIC
SBS Chr3 24612978 A-G Homo INTERGENIC
SBS Chr3 32443518 T-G Homo UTR_3_PRIME
SBS Chr3 34768820 A-T Homo INTERGENIC
SBS Chr4 1350296 C-A Homo INTERGENIC
SBS Chr4 3684647 A-C Hetero INTRON
SBS Chr4 4594809 C-T Hetero INTERGENIC
SBS Chr4 12591284 A-T Hetero INTRON
SBS Chr4 20829651 A-G Hetero INTERGENIC
SBS Chr4 25678627 C-T Hetero INTERGENIC
SBS Chr5 21408339 C-T Hetero INTERGENIC
SBS Chr6 3173507 T-A Hetero INTERGENIC
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr7 246104 C-T Hetero INTERGENIC
SBS Chr7 20273718 A-G Hetero INTERGENIC
SBS Chr8 4582660 C-A Homo INTERGENIC
SBS Chr8 14641640 C-T Hetero INTERGENIC
SBS Chr8 18645468 C-T Hetero INTERGENIC
SBS Chr8 28627825 C-T Homo INTERGENIC
SBS Chr9 12546499 G-T Homo INTERGENIC
SBS Chr9 22724288 A-G Hetero INTERGENIC
SBS Chr10 10869831 C-T Homo INTERGENIC
SBS Chr10 10905901 C-T Homo UTR_5_PRIME
SBS Chr11 6355123 A-T Hetero INTERGENIC
SBS Chr11 13047565 C-A Hetero INTERGENIC
SBS Chr11 18567902 T-C Homo INTERGENIC
SBS Chr12 16119271 C-T Homo INTERGENIC
SBS Chr12 19146905 G-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 176980 176983 3
Deletion Chr10 3736847 3736849 2
Deletion Chr8 4577803 4577805 2
Deletion Chr5 5510289 5510293 4
Deletion Chr2 10302250 10302251 1
Deletion Chr1 25599001 25663000 63999 7
Deletion Chr11 29582277 29582323 46
Deletion Chr1 42259934 42259935 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16105978 16105981 2
Insertion Chr3 28493523 28493526 2
Insertion Chr10 18667883 18667886 2
Insertion Chr2 13854529 13854531 1
Insertion Chr5 30230376 30230384 7
Insertion Chr8 1411838 1411840 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 11821612 Chr2 31502930 OsKitaake05g096700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14508064	A-C	Homo	INTERGENIC
SBS	Chr1	25019062	T-C	Hetero	INTERGENIC
SBS	Chr1	25490919	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	26660137	G-A	Hetero	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	42249466	T-A	Homo	INTERGENIC
SBS	Chr1	42920311	C-A	Hetero	UTR_3_PRIME
SBS	Chr1	43362651	C-A	Hetero	INTERGENIC
SBS	Chr2	16786012	T-C	Hetero	INTERGENIC
SBS	Chr2	17669918	G-A	Hetero	INTERGENIC
SBS	Chr3	4613511	T-C	Homo	INTRON
SBS	Chr3	18358102	G-T	Hetero	INTERGENIC
SBS	Chr3	24612978	A-G	Homo	INTERGENIC
SBS	Chr3	32443518	T-G	Homo	UTR_3_PRIME
SBS	Chr3	34768820	A-T	Homo	INTERGENIC
SBS	Chr4	1350296	C-A	Homo	INTERGENIC
SBS	Chr4	3684647	A-C	Hetero	INTRON
SBS	Chr4	4594809	C-T	Hetero	INTERGENIC
SBS	Chr4	12591284	A-T	Hetero	INTRON
SBS	Chr4	20829651	A-G	Hetero	INTERGENIC
SBS	Chr4	25678627	C-T	Hetero	INTERGENIC
SBS	Chr5	21408339	C-T	Hetero	INTERGENIC
SBS	Chr6	3173507	T-A	Hetero	INTERGENIC
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr7	246104	C-T	Hetero	INTERGENIC
SBS	Chr7	20273718	A-G	Hetero	INTERGENIC
SBS	Chr8	4582660	C-A	Homo	INTERGENIC
SBS	Chr8	14641640	C-T	Hetero	INTERGENIC
SBS	Chr8	18645468	C-T	Hetero	INTERGENIC
SBS	Chr8	28627825	C-T	Homo	INTERGENIC
SBS	Chr9	12546499	G-T	Homo	INTERGENIC
SBS	Chr9	22724288	A-G	Hetero	INTERGENIC
SBS	Chr10	10869831	C-T	Homo	INTERGENIC
SBS	Chr10	10905901	C-T	Homo	UTR_5_PRIME
SBS	Chr11	6355123	A-T	Hetero	INTERGENIC
SBS	Chr11	13047565	C-A	Hetero	INTERGENIC
SBS	Chr11	18567902	T-C	Homo	INTERGENIC
SBS	Chr12	16119271	C-T	Homo	INTERGENIC
SBS	Chr12	19146905	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	176980	176983	3
Deletion	Chr10	3736847	3736849	2
Deletion	Chr8	4577803	4577805	2
Deletion	Chr5	5510289	5510293	4
Deletion	Chr2	10302250	10302251	1
Deletion	Chr1	25599001	25663000	63999	7
Deletion	Chr11	29582277	29582323	46
Deletion	Chr1	42259934	42259935	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	11821612	Chr2	31502930	OsKitaake05g096700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes