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Mutant Information

Mutant Name	FN-116 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-116 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15209753 T-A Hetero INTRON
SBS Chr1 24525587 G-A Hetero INTERGENIC
SBS Chr1 31360195 C-T Homo INTERGENIC
SBS Chr1 44219088 C-T Hetero INTERGENIC
SBS Chr3 24358959 G-A Hetero INTERGENIC
SBS Chr3 25592519 G-A Hetero INTERGENIC
SBS Chr3 35360398 G-T Hetero INTERGENIC
SBS Chr4 2565636 C-G Hetero INTERGENIC
SBS Chr5 18910141 A-G Homo INTERGENIC
SBS Chr6 10577831 G-A Homo INTRON
SBS Chr6 29958621 G-A Hetero INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr8 7392145 C-T Hetero INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 28820885 C-T Hetero INTRON
SBS Chr9 5748759 T-A Hetero INTERGENIC
SBS Chr9 7126473 G-T Hetero INTERGENIC
SBS Chr10 18431119 C-A Hetero INTRON
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr12 5287270 G-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1481291 1481295 4
Deletion Chr5 4587021 4587022 1 OsKitaake05g053100
Deletion Chr11 7905507 7905512 5
Deletion Chr3 8143087 8143089 2 OsKitaake03g112800
Deletion Chr4 10335753 10335754 1
Deletion Chr7 11984659 11984660 1
Deletion Chr11 12482728 12482737 9
Deletion Chr6 14331090 14331268 178
Deletion Chr8 17502946 17502953 7
Deletion Chr10 18699517 18699520 3
Deletion Chr5 20216489 20216492 3
Deletion Chr4 20651275 20651277 2
Deletion Chr2 26084594 26084596 2
Deletion Chr3 35305040 35305085 45

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30226359 30226361 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 10273645 10325195

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15209753	T-A	Hetero	INTRON
SBS	Chr1	24525587	G-A	Hetero	INTERGENIC
SBS	Chr1	31360195	C-T	Homo	INTERGENIC
SBS	Chr1	44219088	C-T	Hetero	INTERGENIC
SBS	Chr3	24358959	G-A	Hetero	INTERGENIC
SBS	Chr3	25592519	G-A	Hetero	INTERGENIC
SBS	Chr3	35360398	G-T	Hetero	INTERGENIC
SBS	Chr4	2565636	C-G	Hetero	INTERGENIC
SBS	Chr5	18910141	A-G	Homo	INTERGENIC
SBS	Chr6	10577831	G-A	Homo	INTRON
SBS	Chr6	29958621	G-A	Hetero	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr8	7392145	C-T	Hetero	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	28820885	C-T	Hetero	INTRON
SBS	Chr9	5748759	T-A	Hetero	INTERGENIC
SBS	Chr9	7126473	G-T	Hetero	INTERGENIC
SBS	Chr10	18431119	C-A	Hetero	INTRON
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr12	5287270	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1481291	1481295	4
Deletion	Chr5	4587021	4587022	1	OsKitaake05g053100
Deletion	Chr11	7905507	7905512	5
Deletion	Chr3	8143087	8143089	2	OsKitaake03g112800
Deletion	Chr4	10335753	10335754	1
Deletion	Chr7	11984659	11984660	1
Deletion	Chr11	12482728	12482737	9
Deletion	Chr6	14331090	14331268	178
Deletion	Chr8	17502946	17502953	7
Deletion	Chr10	18699517	18699520	3
Deletion	Chr5	20216489	20216492	3
Deletion	Chr4	20651275	20651277	2
Deletion	Chr2	26084594	26084596	2
Deletion	Chr3	35305040	35305085	45

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10273645	10325195

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes