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| Mutant Information |
|---|
| Mutant Name | FN-117 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-117 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12953040 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 14262458 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 18211768 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41517056 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20540923 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31538585 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 34398706 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 34398707 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 33180719 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11089925 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 15980999 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 28528885 | C-T | Homo | INTRON | |
| SBS | Chr5 | 6126580 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 20760763 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 23043995 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10595890 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 21123251 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 8076588 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g073850 |
| SBS | Chr9 | 11230215 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 4311850 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21900605 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 15570702 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5739958 | G-A | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 9713001 | 9721000 | 7999 | OsKitaake03g132301 |
| Deletion | Chr1 | 9749237 | 9749238 | 1 | |
| Deletion | Chr4 | 12193884 | 12193885 | 1 | |
| Deletion | Chr2 | 13844476 | 13844477 | 1 | |
| Deletion | Chr5 | 15424171 | 15424173 | 2 | OsKitaake05g118300 |
| Deletion | Chr10 | 16296642 | 16296643 | 1 | OsKitaake10g109700 |
| Deletion | Chr12 | 19029590 | 19029592 | 2 | |
| Deletion | Chr7 | 21646083 | 21646085 | 2 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 12775239 | 12775241 | 1 | |
| Insertion | Chr7 | 28157969 | 28157971 | 1 | |
| Insertion | Chr3 | 20036001 | 20036003 | 1 | |
| Insertion | Chr3 | 29711027 | 29711030 | 2 | |
| Insertion | Chr4 | 2789826 | 2789832 | 5 | |
| Insertion | Chr9 | 15735412 | 15735415 | 2 | OsKitaake09g111900  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 15601192 | 15623570 | |
| Inversion | Chr2 | 15601203 | 15623575 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 5079367 | Chr3 | 10100323 | 2 |
| Translocation | Chr5 | 5079369 | Chr3 | 10100665 | 2 |