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Mutant Information

Mutant Name	FN-118 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-118 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10524250 G-A Homo INTERGENIC
SBS Chr1 26566563 T-A Homo INTERGENIC
SBS Chr2 29026795 A-G Hetero INTERGENIC
SBS Chr3 1054556 C-A Homo INTRON
SBS Chr3 7125244 G-C Hetero SPLICE_SITE_REGION
SBS Chr3 20010511 A-T Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr6 7109392 G-A Hetero INTERGENIC
SBS Chr8 9491733 C-A Hetero INTERGENIC
SBS Chr8 20240418 G-A Hetero INTERGENIC
SBS Chr8 24292012 A-T Homo INTERGENIC
SBS Chr9 3915422 A-G Hetero INTERGENIC
SBS Chr9 20165027 T-C Hetero UTR_3_PRIME
SBS Chr9 20215000 A-G Hetero INTERGENIC
SBS Chr10 13280092 A-G Homo INTERGENIC
SBS Chr10 15286403 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g097600
SBS Chr10 15286415 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g097600
SBS Chr10 17882049 A-T Hetero INTRON
SBS Chr11 10505755 G-A Hetero INTRON
SBS Chr11 20933704 G-T Homo INTERGENIC
SBS Chr11 25464330 T-G Hetero INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 12936408 12936421 13
Deletion Chr2 17339527 17339635 108 OsKitaake02g174100
Deletion Chr3 17406277 17406279 2
Deletion Chr2 20142525 20142528 3
Deletion Chr4 21984215 21984216 1 OsKitaake04g127800
Deletion Chr1 26000645 26000647 2 OsKitaake01g252800
Deletion Chr8 28023001 28404000 380999 51
Deletion Chr8 28410001 28515000 104999 22
Deletion Chr1 34765110 34765118 8
Deletion Chr1 40806375 40806380 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25238022 25238025 2
Insertion Chr9 2667591 2667595 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10524250	G-A	Homo	INTERGENIC
SBS	Chr1	26566563	T-A	Homo	INTERGENIC
SBS	Chr2	29026795	A-G	Hetero	INTERGENIC
SBS	Chr3	1054556	C-A	Homo	INTRON
SBS	Chr3	7125244	G-C	Hetero	SPLICE_SITE_REGION
SBS	Chr3	20010511	A-T	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr6	7109392	G-A	Hetero	INTERGENIC
SBS	Chr8	9491733	C-A	Hetero	INTERGENIC
SBS	Chr8	20240418	G-A	Hetero	INTERGENIC
SBS	Chr8	24292012	A-T	Homo	INTERGENIC
SBS	Chr9	3915422	A-G	Hetero	INTERGENIC
SBS	Chr9	20165027	T-C	Hetero	UTR_3_PRIME
SBS	Chr9	20215000	A-G	Hetero	INTERGENIC
SBS	Chr10	13280092	A-G	Homo	INTERGENIC
SBS	Chr10	15286403	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g097600
SBS	Chr10	15286415	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g097600
SBS	Chr10	17882049	A-T	Hetero	INTRON
SBS	Chr11	10505755	G-A	Hetero	INTRON
SBS	Chr11	20933704	G-T	Homo	INTERGENIC
SBS	Chr11	25464330	T-G	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	12936408	12936421	13
Deletion	Chr2	17339527	17339635	108	OsKitaake02g174100
Deletion	Chr3	17406277	17406279	2
Deletion	Chr2	20142525	20142528	3
Deletion	Chr4	21984215	21984216	1	OsKitaake04g127800
Deletion	Chr1	26000645	26000647	2	OsKitaake01g252800
Deletion	Chr8	28023001	28404000	380999	51
Deletion	Chr8	28410001	28515000	104999	22
Deletion	Chr1	34765110	34765118	8
Deletion	Chr1	40806375	40806380	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes