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Mutant Information

Mutant Name	FN-119 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-119 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17005116 A-T Hetero INTERGENIC
SBS Chr1 20956959 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g205100
SBS Chr1 33917646 G-A Homo UTR_5_PRIME
SBS Chr2 2682398 C-T Hetero INTERGENIC
SBS Chr2 3654448 G-A Hetero INTERGENIC
SBS Chr2 19671197 C-A Hetero INTRON
SBS Chr2 19671198 A-T Hetero INTRON
SBS Chr2 29274495 A-T Hetero INTERGENIC
SBS Chr3 20420337 G-T Hetero INTERGENIC
SBS Chr3 21015558 G-T Hetero INTERGENIC
SBS Chr3 32326016 G-A Hetero INTERGENIC
SBS Chr3 32326017 G-A Hetero INTERGENIC
SBS Chr3 32752601 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g347700
SBS Chr4 6181810 C-A Hetero INTERGENIC
SBS Chr4 20214263 G-A Hetero INTERGENIC
SBS Chr5 21334154 G-T Hetero INTERGENIC
SBS Chr5 24276939 A-T Hetero INTERGENIC
SBS Chr5 24922847 G-T Hetero INTERGENIC
SBS Chr6 5867303 A-G Homo INTRON
SBS Chr6 26344273 A-G Hetero UTR_3_PRIME
SBS Chr6 26344274 G-A Hetero UTR_3_PRIME
SBS Chr7 10723368 T-C Hetero INTERGENIC
SBS Chr7 11067910 G-A Hetero INTERGENIC
SBS Chr8 19766526 G-A Homo INTRON
SBS Chr10 6390294 G-A Hetero INTERGENIC
SBS Chr10 16405088 A-T Hetero INTERGENIC
SBS Chr12 8051093 C-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 196999 197002 3
Deletion Chr4 810065 810066 1
Deletion Chr8 3199356 3199360 4
Deletion Chr6 4213468 4213470 2
Deletion Chr1 5065115 5065116 1
Deletion Chr8 8204574 8204575 1
Deletion Chr10 8678174 8678339 165
Deletion Chr2 10193300 10193306 6
Deletion Chr7 10913676 10913688 12
Deletion Chr4 13334430 13334436 6
Deletion Chr3 16066101 16066102 1
Deletion Chr8 27457654 27457657 3
Deletion Chr4 35682026 35682044 18

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22162358 22162360 1
Insertion Chr5 30240668 30240670 1
Insertion Chr8 1227183 1227186 2
Insertion Chr11 3383179 3383181 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 23303847 Chr2 19631242 OsKitaake11g185600
Translocation Chr11 23303851 Chr2 19630008 OsKitaake11g185600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17005116	A-T	Hetero	INTERGENIC
SBS	Chr1	20956959	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g205100
SBS	Chr1	33917646	G-A	Homo	UTR_5_PRIME
SBS	Chr2	2682398	C-T	Hetero	INTERGENIC
SBS	Chr2	3654448	G-A	Hetero	INTERGENIC
SBS	Chr2	19671197	C-A	Hetero	INTRON
SBS	Chr2	19671198	A-T	Hetero	INTRON
SBS	Chr2	29274495	A-T	Hetero	INTERGENIC
SBS	Chr3	20420337	G-T	Hetero	INTERGENIC
SBS	Chr3	21015558	G-T	Hetero	INTERGENIC
SBS	Chr3	32326016	G-A	Hetero	INTERGENIC
SBS	Chr3	32326017	G-A	Hetero	INTERGENIC
SBS	Chr3	32752601	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g347700
SBS	Chr4	6181810	C-A	Hetero	INTERGENIC
SBS	Chr4	20214263	G-A	Hetero	INTERGENIC
SBS	Chr5	21334154	G-T	Hetero	INTERGENIC
SBS	Chr5	24276939	A-T	Hetero	INTERGENIC
SBS	Chr5	24922847	G-T	Hetero	INTERGENIC
SBS	Chr6	5867303	A-G	Homo	INTRON
SBS	Chr6	26344273	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	26344274	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	10723368	T-C	Hetero	INTERGENIC
SBS	Chr7	11067910	G-A	Hetero	INTERGENIC
SBS	Chr8	19766526	G-A	Homo	INTRON
SBS	Chr10	6390294	G-A	Hetero	INTERGENIC
SBS	Chr10	16405088	A-T	Hetero	INTERGENIC
SBS	Chr12	8051093	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	196999	197002	3
Deletion	Chr4	810065	810066	1
Deletion	Chr8	3199356	3199360	4
Deletion	Chr6	4213468	4213470	2
Deletion	Chr1	5065115	5065116	1
Deletion	Chr8	8204574	8204575	1
Deletion	Chr10	8678174	8678339	165
Deletion	Chr2	10193300	10193306	6
Deletion	Chr7	10913676	10913688	12
Deletion	Chr4	13334430	13334436	6
Deletion	Chr3	16066101	16066102	1
Deletion	Chr8	27457654	27457657	3
Deletion	Chr4	35682026	35682044	18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	23303847	Chr2	19631242	OsKitaake11g185600
Translocation	Chr11	23303851	Chr2	19630008	OsKitaake11g185600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes