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| Mutant Information |
|---|
| Mutant Name | FN-12 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-12 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1413851 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 2391798 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 1644727 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g025800 |
| SBS | Chr2 | 9609765 | C-A | Hetero | INTRON | |
| SBS | Chr2 | 10838047 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25952864 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27825502 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20373408 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 22323892 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g242600 |
| SBS | Chr3 | 28274935 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29498747 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7687602 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15505671 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4425036 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22326312 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 22326315 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 7765173 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7862461 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8015019 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 13660871 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18798448 | C-T | Hetero | SPLICE_SITE_ACCEPTOR | OsKitaake07g153100 |
| SBS | Chr8 | 11569771 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15580589 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 27585538 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g232700 |
| SBS | Chr9 | 19406046 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g157800 |
| SBS | Chr9 | 21375512 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 4785123 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 18999535 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22932197 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7152003 | C-T | Hetero | SPLICE_SITE_DONOR | OsKitaake12g080100 |
| SBS | Chr12 | 18721151 | T-A | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2540227 | 2540232 | 5 | |
| Deletion | Chr9 | 3038815 | 3038822 | 7 | |
| Deletion | Chr12 | 6794548 | 6794553 | 5 | |
| Deletion | Chr1 | 6961898 | 6961912 | 14 | |
| Deletion | Chr5 | 7788376 | 7788399 | 23 | |
| Deletion | Chr9 | 8781509 | 8781522 | 13 | |
| Deletion | Chr8 | 8857226 | 8857227 | 1 | |
| Deletion | Chr2 | 10587087 | 10587092 | 5 | OsKitaake02g125100 |
| Deletion | Chr10 | 12687810 | 12687826 | 16 | |
| Deletion | Chr5 | 14172240 | 14172242 | 2 | |
| Deletion | Chr2 | 16490519 | 16490529 | 10 | |
| Deletion | Chr3 | 16528056 | 16528058 | 2 | |
| Deletion | Chr4 | 17775269 | 17775286 | 17 | |
| Deletion | Chr3 | 18109462 | 18109469 | 7 | |
| Deletion | Chr4 | 19026101 | 19026108 | 7 | |
| Deletion | Chr11 | 29612001 | 29621000 | 8999 | OsKitaake11g244300 |
| Deletion | Chr11 | 29625001 | 29739000 | 113999 | 15 |
| Deletion | Chr5 | 30106646 | 30106660 | 14 | |
| Deletion | Chr4 | 33451581 | 33451598 | 17 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 5609685 | 5609687 | 1 | |
| Insertion | Chr1 | 24556767 | 24556769 | 1 | OsKitaake01g237000  |