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| Mutant Information |
|---|
| Mutant Name | FN-120 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-120 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 37640996 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 41728547 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42886386 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4201681 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 19534870 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 27439036 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 28467001 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 2109257 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4940514 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9005123 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 11479140 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 13066209 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 16667419 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17430939 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11897340 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11967047 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20501611 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 9881519 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 11178369 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27473924 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 2362797 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14396634 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18214230 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 27255909 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6696697 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 8874049 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20866816 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5813553 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g040100 |
| SBS | Chr10 | 13407131 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 19256984 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11716936 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12447057 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6329534 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14225185 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16366633 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 19051634 | G-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 90250 | 90602 | 352 | |
| Deletion | Chr2 | 1045671 | 1045672 | 1 | |
| Deletion | Chr12 | 5786902 | 5786914 | 12 | OsKitaake12g069900 |
| Deletion | Chr7 | 12340679 | 12340680 | 1 | |
| Deletion | Chr8 | 12823002 | 12823003 | 1 | |
| Deletion | Chr7 | 15944872 | 15944879 | 7 | |
| Deletion | Chr12 | 16347962 | 16347967 | 5 | |
| Deletion | Chr3 | 16739732 | 16739904 | 172 | |
| Deletion | Chr2 | 25009685 | 25009767 | 82 | |
| Deletion | Chr3 | 27484333 | 27484334 | 1 | OsKitaake03g283700 |
Insertions: 5