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Mutant Information

Mutant Name	FN-121 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-121 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13499299 A-G Homo INTERGENIC
SBS Chr1 42963041 A-C Hetero INTRON
SBS Chr2 1181015 G-A Homo UTR_3_PRIME
SBS Chr2 2722015 T-A Hetero INTERGENIC
SBS Chr2 6231614 A-G Hetero INTRON
SBS Chr2 7969655 A-G Hetero INTERGENIC
SBS Chr2 20076668 G-T Hetero INTRON
SBS Chr2 28252651 T-C Homo INTERGENIC
SBS Chr2 30178992 C-T Homo INTERGENIC
SBS Chr2 32008339 G-T Hetero INTERGENIC
SBS Chr2 33567857 A-C Homo INTRON
SBS Chr3 7418837 T-A Homo INTERGENIC
SBS Chr3 16835647 C-A Homo INTERGENIC
SBS Chr3 20429872 G-A Hetero INTERGENIC
SBS Chr3 21936735 C-T Homo INTERGENIC
SBS Chr3 33392053 G-A Hetero INTERGENIC
SBS Chr4 3492412 T-C Hetero INTERGENIC
SBS Chr5 2419689 A-G Homo UTR_5_PRIME
SBS Chr5 5765423 A-T Homo INTRON
SBS Chr5 21367031 T-C Hetero INTERGENIC
SBS Chr6 18096005 A-T Hetero INTERGENIC
SBS Chr6 28711094 T-C Hetero INTERGENIC
SBS Chr7 11560747 A-G Hetero INTERGENIC
SBS Chr7 17849833 A-G Hetero INTERGENIC
SBS Chr8 17548634 G-A Hetero INTERGENIC
SBS Chr9 18604663 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g146700
SBS Chr10 8731195 T-G Hetero INTERGENIC
SBS Chr10 14721464 C-T Hetero INTERGENIC
SBS Chr10 17606023 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g120600
SBS Chr10 19434792 C-G Hetero INTRON
SBS Chr11 6377053 C-A Hetero INTERGENIC
SBS Chr11 6377083 G-A Hetero INTERGENIC
SBS Chr11 7193570 T-C Homo INTRON
SBS Chr11 19128596 A-G Hetero INTERGENIC
SBS Chr11 29607078 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g244200
SBS Chr11 29607079 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g244200
SBS Chr12 14061409 G-A Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1600594 1600607 13
Deletion Chr6 2405012 2405020 8
Deletion Chr2 2441485 2441494 9
Deletion Chr11 7193556 7193557 1
Deletion Chr1 8106001 8302000 195999 23
Deletion Chr10 9813360 9813371 11 OsKitaake10g057300
Deletion Chr4 10800644 10800650 6
Deletion Chr6 12497755 12497757 2
Deletion Chr3 15348262 15348263 1
Deletion Chr3 17055720 17055721 1
Deletion Chr1 17255467 17255472 5
Deletion Chr11 17869638 17869639 1
Deletion Chr7 22464107 22464113 6
Deletion Chr2 25561518 25561519 1
Deletion Chr6 26764779 26764781 2
Deletion Chr5 26807449 26807451 2
Deletion Chr3 27601471 27601473 2
Deletion Chr1 29524391 29524399 8
Deletion Chr1 29580122 29580139 17
Deletion Chr4 31542001 31548000 5999 2
Deletion Chr3 36698143 36698146 3
Deletion Chr1 44272957 44272958 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 20829521 20829524 2
Insertion Chr2 23184758 23184761 2
Insertion Chr9 22728397 22728401 3
Insertion Chr4 17909875 17909877 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 29432653 29546128

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13499299	A-G	Homo	INTERGENIC
SBS	Chr1	42963041	A-C	Hetero	INTRON
SBS	Chr2	1181015	G-A	Homo	UTR_3_PRIME
SBS	Chr2	2722015	T-A	Hetero	INTERGENIC
SBS	Chr2	6231614	A-G	Hetero	INTRON
SBS	Chr2	7969655	A-G	Hetero	INTERGENIC
SBS	Chr2	20076668	G-T	Hetero	INTRON
SBS	Chr2	28252651	T-C	Homo	INTERGENIC
SBS	Chr2	30178992	C-T	Homo	INTERGENIC
SBS	Chr2	32008339	G-T	Hetero	INTERGENIC
SBS	Chr2	33567857	A-C	Homo	INTRON
SBS	Chr3	7418837	T-A	Homo	INTERGENIC
SBS	Chr3	16835647	C-A	Homo	INTERGENIC
SBS	Chr3	20429872	G-A	Hetero	INTERGENIC
SBS	Chr3	21936735	C-T	Homo	INTERGENIC
SBS	Chr3	33392053	G-A	Hetero	INTERGENIC
SBS	Chr4	3492412	T-C	Hetero	INTERGENIC
SBS	Chr5	2419689	A-G	Homo	UTR_5_PRIME
SBS	Chr5	5765423	A-T	Homo	INTRON
SBS	Chr5	21367031	T-C	Hetero	INTERGENIC
SBS	Chr6	18096005	A-T	Hetero	INTERGENIC
SBS	Chr6	28711094	T-C	Hetero	INTERGENIC
SBS	Chr7	11560747	A-G	Hetero	INTERGENIC
SBS	Chr7	17849833	A-G	Hetero	INTERGENIC
SBS	Chr8	17548634	G-A	Hetero	INTERGENIC
SBS	Chr9	18604663	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g146700
SBS	Chr10	8731195	T-G	Hetero	INTERGENIC
SBS	Chr10	14721464	C-T	Hetero	INTERGENIC
SBS	Chr10	17606023	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g120600
SBS	Chr10	19434792	C-G	Hetero	INTRON
SBS	Chr11	6377053	C-A	Hetero	INTERGENIC
SBS	Chr11	6377083	G-A	Hetero	INTERGENIC
SBS	Chr11	7193570	T-C	Homo	INTRON
SBS	Chr11	19128596	A-G	Hetero	INTERGENIC
SBS	Chr11	29607078	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g244200
SBS	Chr11	29607079	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g244200
SBS	Chr12	14061409	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1600594	1600607	13
Deletion	Chr6	2405012	2405020	8
Deletion	Chr2	2441485	2441494	9
Deletion	Chr11	7193556	7193557	1
Deletion	Chr1	8106001	8302000	195999	23
Deletion	Chr10	9813360	9813371	11	OsKitaake10g057300
Deletion	Chr4	10800644	10800650	6
Deletion	Chr6	12497755	12497757	2
Deletion	Chr3	15348262	15348263	1
Deletion	Chr3	17055720	17055721	1
Deletion	Chr1	17255467	17255472	5
Deletion	Chr11	17869638	17869639	1
Deletion	Chr7	22464107	22464113	6
Deletion	Chr2	25561518	25561519	1
Deletion	Chr6	26764779	26764781	2
Deletion	Chr5	26807449	26807451	2
Deletion	Chr3	27601471	27601473	2
Deletion	Chr1	29524391	29524399	8
Deletion	Chr1	29580122	29580139	17
Deletion	Chr4	31542001	31548000	5999	2
Deletion	Chr3	36698143	36698146	3
Deletion	Chr1	44272957	44272958	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	29432653	29546128

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes