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Mutant Information

Mutant Name	FN-122 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-122 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10011778 G-A Hetero INTERGENIC
SBS Chr1 31805693 C-G Hetero INTERGENIC
SBS Chr1 31806256 G-C Hetero INTERGENIC
SBS Chr2 15764051 G-T Hetero INTERGENIC
SBS Chr2 34226155 T-A Homo INTERGENIC
SBS Chr3 10448736 T-A Hetero INTRON
SBS Chr3 11984903 G-A Hetero INTERGENIC
SBS Chr4 20921058 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g114300
SBS Chr5 29842907 A-T Homo INTERGENIC
SBS Chr6 7978077 T-A Hetero INTERGENIC
SBS Chr6 7978079 T-A Hetero INTERGENIC
SBS Chr6 11264402 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g124500
SBS Chr6 15505641 A-C Hetero INTERGENIC
SBS Chr6 16421004 C-G Homo INTERGENIC
SBS Chr8 6677283 C-T Homo INTERGENIC
SBS Chr8 19404422 C-T Hetero INTERGENIC
SBS Chr8 28540715 T-G Hetero SYNONYMOUS_CODING
SBS Chr9 12852189 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g085300
SBS Chr10 14356473 C-T Hetero INTERGENIC
SBS Chr10 18178683 T-A Homo UTR_3_PRIME
SBS Chr11 16779999 A-G Hetero INTERGENIC
SBS Chr11 16910017 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1834001 1873000 38999 5
Deletion Chr9 2755373 2755374 1
Deletion Chr6 8462142 8462231 89
Deletion Chr10 8913363 8913365 2
Deletion Chr2 13837961 13837963 2
Deletion Chr9 14412266 14412595 329
Deletion Chr10 14644999 14645047 48
Deletion Chr10 17596890 17596891 1 OsKitaake10g120300
Deletion Chr5 26564568 26564569 1
Deletion Chr4 32799414 32799416 2
Deletion Chr4 32849611 32849612 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 12620554 12620557 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 21273864 Chr1 20866314

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10011778	G-A	Hetero	INTERGENIC
SBS	Chr1	31805693	C-G	Hetero	INTERGENIC
SBS	Chr1	31806256	G-C	Hetero	INTERGENIC
SBS	Chr2	15764051	G-T	Hetero	INTERGENIC
SBS	Chr2	34226155	T-A	Homo	INTERGENIC
SBS	Chr3	10448736	T-A	Hetero	INTRON
SBS	Chr3	11984903	G-A	Hetero	INTERGENIC
SBS	Chr4	20921058	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g114300
SBS	Chr5	29842907	A-T	Homo	INTERGENIC
SBS	Chr6	7978077	T-A	Hetero	INTERGENIC
SBS	Chr6	7978079	T-A	Hetero	INTERGENIC
SBS	Chr6	11264402	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g124500
SBS	Chr6	15505641	A-C	Hetero	INTERGENIC
SBS	Chr6	16421004	C-G	Homo	INTERGENIC
SBS	Chr8	6677283	C-T	Homo	INTERGENIC
SBS	Chr8	19404422	C-T	Hetero	INTERGENIC
SBS	Chr8	28540715	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	12852189	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g085300
SBS	Chr10	14356473	C-T	Hetero	INTERGENIC
SBS	Chr10	18178683	T-A	Homo	UTR_3_PRIME
SBS	Chr11	16779999	A-G	Hetero	INTERGENIC
SBS	Chr11	16910017	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1834001	1873000	38999	5
Deletion	Chr9	2755373	2755374	1
Deletion	Chr6	8462142	8462231	89
Deletion	Chr10	8913363	8913365	2
Deletion	Chr2	13837961	13837963	2
Deletion	Chr9	14412266	14412595	329
Deletion	Chr10	14644999	14645047	48
Deletion	Chr10	17596890	17596891	1	OsKitaake10g120300
Deletion	Chr5	26564568	26564569	1
Deletion	Chr4	32799414	32799416	2
Deletion	Chr4	32849611	32849612	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	21273864	Chr1	20866314

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes