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Mutant Information

Mutant Name	FN-123 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-123 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4666392 G-A Homo INTERGENIC
SBS Chr1 12843016 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g153200
SBS Chr1 16242941 G-C Homo INTERGENIC
SBS Chr1 30133926 G-T Homo INTERGENIC
SBS Chr3 24815675 G-A Hetero INTERGENIC
SBS Chr3 27158945 C-A Homo INTERGENIC
SBS Chr3 29708670 G-A Hetero INTERGENIC
SBS Chr4 5710138 C-T Homo INTERGENIC
SBS Chr4 31606457 C-T Homo INTERGENIC
SBS Chr4 31933610 T-C Homo INTRON
SBS Chr5 10998377 T-A Hetero INTERGENIC
SBS Chr5 26115924 A-G Hetero INTRON
SBS Chr6 20825030 T-C Hetero INTERGENIC
SBS Chr6 24401867 A-G Hetero INTERGENIC
SBS Chr6 27835186 C-T Homo INTERGENIC
SBS Chr7 22553767 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g192200
SBS Chr7 23886009 T-G Homo INTERGENIC
SBS Chr7 25902535 C-T Hetero INTERGENIC
SBS Chr8 11558631 C-T Hetero INTERGENIC
SBS Chr9 1616491 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g009200
SBS Chr9 3706261 A-G Hetero INTERGENIC
SBS Chr9 13038550 C-T Hetero INTERGENIC
SBS Chr9 20698151 A-G Homo INTRON
SBS Chr10 13202132 A-C Hetero INTERGENIC
SBS Chr11 11854329 T-A Hetero INTERGENIC
SBS Chr12 7106089 T-C Hetero INTERGENIC
SBS Chr12 9349171 C-T Hetero INTERGENIC
SBS Chr12 10699858 A-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1184718 1184719 1
Deletion Chr12 7574989 7575144 155
Deletion Chr7 8961053 8961054 1
Deletion Chr2 14747241 14747243 2
Deletion Chr5 18164273 18164275 2
Deletion Chr9 18446498 18446500 2
Deletion Chr8 23353120 23353121 1
Deletion Chr12 25470060 25470061 1
Deletion Chr8 26457323 26457324 1
Deletion Chr3 26875001 26884000 8999
Deletion Chr3 28461276 28461282 6
Deletion Chr4 30265010 30265021 11

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43671084 43671086 1
Insertion Chr2 28849671 28849673 1
Insertion Chr4 2898788 2898791 2
Insertion Chr5 30232136 30232144 7
Insertion Chr7 12045873 12045875 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 5025016 6021211
Inversion Chr10 14462209 14491722 OsKitaake10g090600
Inversion Chr7 19690461 19797119

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6021227 Chr2 37132291
Translocation Chr12 6022471 Chr7 19688922
Translocation Chr7 19690525 Chr2 37132309
Translocation Chr12 24946940 Chr10 7457214
Translocation Chr2 29520386 Chr1 29237069

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4666392	G-A	Homo	INTERGENIC
SBS	Chr1	12843016	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g153200
SBS	Chr1	16242941	G-C	Homo	INTERGENIC
SBS	Chr1	30133926	G-T	Homo	INTERGENIC
SBS	Chr3	24815675	G-A	Hetero	INTERGENIC
SBS	Chr3	27158945	C-A	Homo	INTERGENIC
SBS	Chr3	29708670	G-A	Hetero	INTERGENIC
SBS	Chr4	5710138	C-T	Homo	INTERGENIC
SBS	Chr4	31606457	C-T	Homo	INTERGENIC
SBS	Chr4	31933610	T-C	Homo	INTRON
SBS	Chr5	10998377	T-A	Hetero	INTERGENIC
SBS	Chr5	26115924	A-G	Hetero	INTRON
SBS	Chr6	20825030	T-C	Hetero	INTERGENIC
SBS	Chr6	24401867	A-G	Hetero	INTERGENIC
SBS	Chr6	27835186	C-T	Homo	INTERGENIC
SBS	Chr7	22553767	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g192200
SBS	Chr7	23886009	T-G	Homo	INTERGENIC
SBS	Chr7	25902535	C-T	Hetero	INTERGENIC
SBS	Chr8	11558631	C-T	Hetero	INTERGENIC
SBS	Chr9	1616491	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g009200
SBS	Chr9	3706261	A-G	Hetero	INTERGENIC
SBS	Chr9	13038550	C-T	Hetero	INTERGENIC
SBS	Chr9	20698151	A-G	Homo	INTRON
SBS	Chr10	13202132	A-C	Hetero	INTERGENIC
SBS	Chr11	11854329	T-A	Hetero	INTERGENIC
SBS	Chr12	7106089	T-C	Hetero	INTERGENIC
SBS	Chr12	9349171	C-T	Hetero	INTERGENIC
SBS	Chr12	10699858	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1184718	1184719	1
Deletion	Chr12	7574989	7575144	155
Deletion	Chr7	8961053	8961054	1
Deletion	Chr2	14747241	14747243	2
Deletion	Chr5	18164273	18164275	2
Deletion	Chr9	18446498	18446500	2
Deletion	Chr8	23353120	23353121	1
Deletion	Chr12	25470060	25470061	1
Deletion	Chr8	26457323	26457324	1
Deletion	Chr3	26875001	26884000	8999
Deletion	Chr3	28461276	28461282	6
Deletion	Chr4	30265010	30265021	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5025016	6021211
Inversion	Chr10	14462209	14491722	OsKitaake10g090600
Inversion	Chr7	19690461	19797119

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes