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Mutant Information

Mutant Name	FN-124 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-124 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1013147 A-T Hetero INTRON
SBS Chr1 1276469 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 4075692 T-C Hetero INTERGENIC
SBS Chr1 7951892 A-G Homo INTERGENIC
SBS Chr2 30154336 T-C Hetero INTRON
SBS Chr2 32208874 A-T Hetero INTERGENIC
SBS Chr2 33665216 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 455313 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g006800
SBS Chr3 19463871 G-T Hetero INTERGENIC
SBS Chr3 31734696 T-C Hetero INTRON
SBS Chr4 11302611 C-T Hetero INTERGENIC
SBS Chr4 22016761 C-T Hetero INTERGENIC
SBS Chr5 20709333 G-C Hetero INTERGENIC
SBS Chr5 22024115 A-G Homo INTERGENIC
SBS Chr6 7100758 C-T Hetero INTERGENIC
SBS Chr6 14273964 C-T Hetero INTERGENIC
SBS Chr6 15933161 T-A Hetero INTERGENIC
SBS Chr7 19631310 C-A Homo INTERGENIC
SBS Chr7 24701584 A-T Homo INTERGENIC
SBS Chr8 22088622 G-T Homo INTERGENIC
SBS Chr8 26833838 G-A Homo UTR_3_PRIME
SBS Chr8 27856399 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g232900
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr9 7293642 C-G Homo INTERGENIC
SBS Chr10 22281328 A-C Hetero INTRON
SBS Chr12 861733 C-T Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr8 5432526 5432528 2
Deletion Chr7 8177212 8177214 2
Deletion Chr10 8673574 8673740 166
Deletion Chr8 16528709 16528731 22
Deletion Chr3 36171303 36171305 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4959531 4959534 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 30648346 30672716 OsKitaake03g322200
Inversion Chr3 30648355 30672717 OsKitaake03g322200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1013147	A-T	Hetero	INTRON
SBS	Chr1	1276469	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	4075692	T-C	Hetero	INTERGENIC
SBS	Chr1	7951892	A-G	Homo	INTERGENIC
SBS	Chr2	30154336	T-C	Hetero	INTRON
SBS	Chr2	32208874	A-T	Hetero	INTERGENIC
SBS	Chr2	33665216	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	455313	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g006800
SBS	Chr3	19463871	G-T	Hetero	INTERGENIC
SBS	Chr3	31734696	T-C	Hetero	INTRON
SBS	Chr4	11302611	C-T	Hetero	INTERGENIC
SBS	Chr4	22016761	C-T	Hetero	INTERGENIC
SBS	Chr5	20709333	G-C	Hetero	INTERGENIC
SBS	Chr5	22024115	A-G	Homo	INTERGENIC
SBS	Chr6	7100758	C-T	Hetero	INTERGENIC
SBS	Chr6	14273964	C-T	Hetero	INTERGENIC
SBS	Chr6	15933161	T-A	Hetero	INTERGENIC
SBS	Chr7	19631310	C-A	Homo	INTERGENIC
SBS	Chr7	24701584	A-T	Homo	INTERGENIC
SBS	Chr8	22088622	G-T	Homo	INTERGENIC
SBS	Chr8	26833838	G-A	Homo	UTR_3_PRIME
SBS	Chr8	27856399	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g232900
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr9	7293642	C-G	Homo	INTERGENIC
SBS	Chr10	22281328	A-C	Hetero	INTRON
SBS	Chr12	861733	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr8	5432526	5432528	2
Deletion	Chr7	8177212	8177214	2
Deletion	Chr10	8673574	8673740	166
Deletion	Chr8	16528709	16528731	22
Deletion	Chr3	36171303	36171305	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	30648346	30672716	OsKitaake03g322200
Inversion	Chr3	30648355	30672717	OsKitaake03g322200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes