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Mutant Information |
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Mutant Name | FN-125 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-125 Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 1470027 | T-C | Hetero | UTR_5_PRIME | |
SBS | Chr2 | 17244270 | A-T | Hetero | INTERGENIC | |
SBS | Chr2 | 28285316 | G-A | Homo | INTERGENIC | |
SBS | Chr3 | 24630693 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g263401 |
SBS | Chr4 | 3889594 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 8178904 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 15210103 | A-T | Hetero | INTERGENIC | |
SBS | Chr4 | 16954247 | G-T | Hetero | INTERGENIC | |
SBS | Chr5 | 9310722 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 9310726 | T-C | Hetero | INTERGENIC | |
SBS | Chr5 | 16856001 | C-T | Homo | INTERGENIC | |
SBS | Chr6 | 21166193 | G-T | Hetero | INTERGENIC | |
SBS | Chr7 | 241381 | C-A | Hetero | INTERGENIC | |
SBS | Chr7 | 241382 | T-C | Hetero | INTERGENIC | |
SBS | Chr8 | 16508443 | C-T | Hetero | INTERGENIC | |
SBS | Chr8 | 25415824 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 19259879 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 5174795 | G-T | Hetero | INTERGENIC | |
SBS | Chr11 | 21320405 | T-A | Homo | INTERGENIC | |
SBS | Chr12 | 8016756 | C-T | Hetero | INTERGENIC | |
SBS | Chr12 | 10503989 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 13742571 | G-C | Hetero | INTERGENIC | |
SBS | Chr12 | 17929355 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 19076329 | A-T | Hetero | INTRON | |
SBS | Chr12 | 24962428 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 26390667 | A-G | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr10 | 3661233 | 3661235 | 2 | |
Deletion | Chr1 | 4451871 | 4451964 | 93 | |
Deletion | Chr12 | 6903938 | 6903940 | 2 | OsKitaake12g078200 |
Deletion | Chr3 | 13113742 | 13113743 | 1 | OsKitaake03g175700 |
Deletion | Chr9 | 15941885 | 15941886 | 1 | |
Deletion | Chr5 | 16407721 | 16407723 | 2 | |
Deletion | Chr6 | 16786828 | 16786829 | 1 | OsKitaake06g158400 |
Deletion | Chr3 | 19207844 | 19207846 | 2 | |
Deletion | Chr12 | 24846717 | 24846718 | 1 | |
Deletion | Chr1 | 31077464 | 31077470 | 6 | |
Deletion | Chr3 | 33770699 | 33770790 | 91 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr2 | 14347858 | 14347860 | 1 | |
Insertion | Chr10 | 8005993 | 8005997 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr2 | 12321187 | 13028274 | |
Inversion | Chr8 | 25337968 | 25415463 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr11 | 27085159 | Chr10 | 15105130 | |
Translocation | Chr11 | 27091529 | Chr10 | 15105131 | |
Translocation | Chr3 | 30114156 | Chr2 | 12321032 | |
Translocation | Chr6 | 30731342 | Chr5 | 2421735 | OsKitaake05g027400 |
Translocation | Chr6 | 30731367 | Chr5 | 2409729 |