Search Kitaake

Mutant Information

Mutant Name	FN-126 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-126 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2934304 G-A Hetero INTERGENIC
SBS Chr1 11277852 T-A Homo INTRON
SBS Chr1 20036881 T-C Homo INTERGENIC
SBS Chr2 34437203 G-T Homo INTERGENIC
SBS Chr3 4539859 T-C Homo INTRON
SBS Chr3 13095480 A-G Hetero INTERGENIC
SBS Chr3 16073621 A-G Hetero INTERGENIC
SBS Chr4 15936122 T-A Homo INTRON
SBS Chr6 6351208 A-C Hetero INTERGENIC
SBS Chr6 14074938 T-A Hetero INTERGENIC
SBS Chr6 20269842 A-G Homo UTR_3_PRIME
SBS Chr6 25303109 T-C Hetero INTERGENIC
SBS Chr6 25303110 T-C Hetero INTERGENIC
SBS Chr7 13229647 T-G Homo INTERGENIC
SBS Chr7 14251149 G-A Homo INTERGENIC
SBS Chr7 16222139 T-C Homo INTRON
SBS Chr7 20583122 G-C Homo INTERGENIC
SBS Chr8 13912347 C-G Homo INTERGENIC
SBS Chr9 539259 C-T Hetero INTERGENIC
SBS Chr9 7992621 T-A Hetero INTRON
SBS Chr9 9387462 C-T Homo INTERGENIC
SBS Chr9 12067810 A-T Homo INTERGENIC
SBS Chr9 17208967 G-A Homo STOP_GAINED OsKitaake09g129000
SBS Chr10 9708914 A-G Hetero INTERGENIC
SBS Chr11 4098976 C-G Hetero INTRON
SBS Chr12 17510756 T-G Hetero UTR_3_PRIME

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1485219 1485220 1
Deletion Chr6 3435139 3435147 8
Deletion Chr2 5246518 5246530 12 OsKitaake02g072100
Deletion Chr3 10628221 10628225 4 OsKitaake03g145900
Deletion Chr6 11037001 11105000 67999 5
Deletion Chr4 11594906 11594921 15
Deletion Chr9 14953198 14953208 10
Deletion Chr11 15372099 15372111 12
Deletion Chr11 15577123 15577137 14
Deletion Chr1 20036798 20036802 4
Deletion Chr11 20380456 20380459 3
Deletion Chr9 20664274 20664289 15
Deletion Chr10 21200818 21200827 9
Deletion Chr2 34277696 34277698 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 28411964 28411967 2
Insertion Chr3 3129158 3129160 1
Insertion Chr4 31647938 31647940 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2934304	G-A	Hetero	INTERGENIC
SBS	Chr1	11277852	T-A	Homo	INTRON
SBS	Chr1	20036881	T-C	Homo	INTERGENIC
SBS	Chr2	34437203	G-T	Homo	INTERGENIC
SBS	Chr3	4539859	T-C	Homo	INTRON
SBS	Chr3	13095480	A-G	Hetero	INTERGENIC
SBS	Chr3	16073621	A-G	Hetero	INTERGENIC
SBS	Chr4	15936122	T-A	Homo	INTRON
SBS	Chr6	6351208	A-C	Hetero	INTERGENIC
SBS	Chr6	14074938	T-A	Hetero	INTERGENIC
SBS	Chr6	20269842	A-G	Homo	UTR_3_PRIME
SBS	Chr6	25303109	T-C	Hetero	INTERGENIC
SBS	Chr6	25303110	T-C	Hetero	INTERGENIC
SBS	Chr7	13229647	T-G	Homo	INTERGENIC
SBS	Chr7	14251149	G-A	Homo	INTERGENIC
SBS	Chr7	16222139	T-C	Homo	INTRON
SBS	Chr7	20583122	G-C	Homo	INTERGENIC
SBS	Chr8	13912347	C-G	Homo	INTERGENIC
SBS	Chr9	539259	C-T	Hetero	INTERGENIC
SBS	Chr9	7992621	T-A	Hetero	INTRON
SBS	Chr9	9387462	C-T	Homo	INTERGENIC
SBS	Chr9	12067810	A-T	Homo	INTERGENIC
SBS	Chr9	17208967	G-A	Homo	STOP_GAINED	OsKitaake09g129000
SBS	Chr10	9708914	A-G	Hetero	INTERGENIC
SBS	Chr11	4098976	C-G	Hetero	INTRON
SBS	Chr12	17510756	T-G	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1485219	1485220	1
Deletion	Chr6	3435139	3435147	8
Deletion	Chr2	5246518	5246530	12	OsKitaake02g072100
Deletion	Chr3	10628221	10628225	4	OsKitaake03g145900
Deletion	Chr6	11037001	11105000	67999	5
Deletion	Chr4	11594906	11594921	15
Deletion	Chr9	14953198	14953208	10
Deletion	Chr11	15372099	15372111	12
Deletion	Chr11	15577123	15577137	14
Deletion	Chr1	20036798	20036802	4
Deletion	Chr11	20380456	20380459	3
Deletion	Chr9	20664274	20664289	15
Deletion	Chr10	21200818	21200827	9
Deletion	Chr2	34277696	34277698	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes