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| Mutant Information |
|---|
| Mutant Name | FN-127 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-127 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23337383 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25900802 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1966943 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g029800 |
| SBS | Chr3 | 21020664 | A-T | Homo | INTRON | |
| SBS | Chr3 | 25624396 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 658440 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5194974 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 32283347 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1235665 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7686644 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 16625416 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 24461839 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13120860 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 673649 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8399415 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 18918156 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 16607440 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1300147 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7957689 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10116593 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14029422 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 6584207 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9379720 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9379721 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11882939 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21221148 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g168100 |
| SBS | Chr11 | 23672121 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29708384 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 14303349 | T-C | Hetero | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 983684 | 983690 | 6 | |
| Deletion | Chr4 | 3919256 | 3919262 | 6 | |
| Deletion | Chr11 | 6641476 | 6641798 | 322 | OsKitaake11g078900 |
| Deletion | Chr4 | 7654581 | 7654584 | 3 | |
| Deletion | Chr3 | 16528056 | 16528058 | 2 | |
| Deletion | Chr10 | 21495095 | 21495096 | 1 | |
| Deletion | Chr9 | 22209538 | 22209539 | 1 | |
| Deletion | Chr12 | 22825578 | 22825584 | 6 | |
| Deletion | Chr6 | 26807933 | 26807934 | 1 | |
| Deletion | Chr4 | 31599141 | 31599144 | 3 | |
| Deletion | Chr1 | 36446248 | 36446249 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 33561235 | 33561238 | 2 | |
| Insertion | Chr2 | 33892064 | 33892066 | 1 | |
| Insertion | Chr4 | 2728023 | 2728026 | 2 | |
| Insertion | Chr10 | 8598209 | 8598214 | 4 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 10784953 | Chr2 | 36296277 | OsKitaake02g383900 |
| Translocation | Chr5 | 10785607 | Chr2 | 36296276 | OsKitaake02g383900 |
| Translocation | Chr7 | 23402494 | Chr1 | 3401891 | 2 |
| Translocation | Chr7 | 23405685 | Chr1 | 3401887 | OsKitaake01g045200 |