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Mutant Information

Mutant Name	FN-128 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-128 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695932 G-A Homo INTRON
SBS Chr2 29648540 T-C Hetero INTERGENIC
SBS Chr2 30042540 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g305100
SBS Chr3 7058897 C-G Hetero INTERGENIC
SBS Chr3 28321867 G-A Hetero INTERGENIC
SBS Chr4 4472124 C-A Hetero INTERGENIC
SBS Chr4 18155405 A-G Hetero INTERGENIC
SBS Chr4 18691100 T-A Hetero INTERGENIC
SBS Chr4 19518740 A-T Hetero INTRON
SBS Chr4 19518741 A-T Hetero INTRON
SBS Chr5 7220828 G-T Hetero INTERGENIC
SBS Chr5 12795381 C-G Homo INTERGENIC
SBS Chr5 24834016 A-T Homo INTRON
SBS Chr6 4013139 G-A Homo INTERGENIC
SBS Chr7 11626854 T-C Homo INTERGENIC
SBS Chr7 21716263 A-T Hetero INTERGENIC
SBS Chr8 24611845 A-T Homo INTERGENIC
SBS Chr9 3600460 G-A Hetero INTERGENIC
SBS Chr9 3955212 A-T Hetero UTR_3_PRIME
SBS Chr9 6419210 G-A Hetero INTERGENIC
SBS Chr9 21785038 C-T Homo INTERGENIC
SBS Chr9 22516813 A-T Hetero INTERGENIC
SBS Chr10 16511394 A-T Hetero INTRON
SBS Chr11 15564795 A-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr11 4788001 4852000 63999 4
Deletion Chr11 4854001 4887000 32999 5
Deletion Chr2 8309156 8309157 1
Deletion Chr10 8670277 8670443 166
Deletion Chr2 9323333 9323334 1
Deletion Chr2 13094657 13094730 73
Deletion Chr3 16070648 16070650 2
Deletion Chr3 20035532 20035687 155
Deletion Chr7 20575326 20575328 2
Deletion Chr12 21358274 21358490 216
Deletion Chr12 25493054 25493055 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26435872 26435874 1
Insertion Chr1 31442212 31442215 2
Insertion Chr4 18345247 18345250 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 9751197 10530818 2
Inversion Chr5 15284066 15970381
Inversion Chr3 29260584 29656953 2
Inversion Chr3 29260590 29656952 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13161241 Chr8 13883618

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr2	29648540	T-C	Hetero	INTERGENIC
SBS	Chr2	30042540	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g305100
SBS	Chr3	7058897	C-G	Hetero	INTERGENIC
SBS	Chr3	28321867	G-A	Hetero	INTERGENIC
SBS	Chr4	4472124	C-A	Hetero	INTERGENIC
SBS	Chr4	18155405	A-G	Hetero	INTERGENIC
SBS	Chr4	18691100	T-A	Hetero	INTERGENIC
SBS	Chr4	19518740	A-T	Hetero	INTRON
SBS	Chr4	19518741	A-T	Hetero	INTRON
SBS	Chr5	7220828	G-T	Hetero	INTERGENIC
SBS	Chr5	12795381	C-G	Homo	INTERGENIC
SBS	Chr5	24834016	A-T	Homo	INTRON
SBS	Chr6	4013139	G-A	Homo	INTERGENIC
SBS	Chr7	11626854	T-C	Homo	INTERGENIC
SBS	Chr7	21716263	A-T	Hetero	INTERGENIC
SBS	Chr8	24611845	A-T	Homo	INTERGENIC
SBS	Chr9	3600460	G-A	Hetero	INTERGENIC
SBS	Chr9	3955212	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	6419210	G-A	Hetero	INTERGENIC
SBS	Chr9	21785038	C-T	Homo	INTERGENIC
SBS	Chr9	22516813	A-T	Hetero	INTERGENIC
SBS	Chr10	16511394	A-T	Hetero	INTRON
SBS	Chr11	15564795	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr11	4788001	4852000	63999	4
Deletion	Chr11	4854001	4887000	32999	5
Deletion	Chr2	8309156	8309157	1
Deletion	Chr10	8670277	8670443	166
Deletion	Chr2	9323333	9323334	1
Deletion	Chr2	13094657	13094730	73
Deletion	Chr3	16070648	16070650	2
Deletion	Chr3	20035532	20035687	155
Deletion	Chr7	20575326	20575328	2
Deletion	Chr12	21358274	21358490	216
Deletion	Chr12	25493054	25493055	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	9751197	10530818	2
Inversion	Chr5	15284066	15970381
Inversion	Chr3	29260584	29656953	2
Inversion	Chr3	29260590	29656952	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes