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Mutant Information

Mutant Name	FN-129 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-129 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 65

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2168892 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 2614070 T-C Hetero INTRON
SBS Chr1 3882348 A-C Hetero INTERGENIC
SBS Chr1 6761754 T-C Hetero INTERGENIC
SBS Chr1 8591797 G-A Hetero INTERGENIC
SBS Chr1 10017074 T-C Hetero INTERGENIC
SBS Chr1 10017075 T-C Hetero INTERGENIC
SBS Chr1 35182773 A-T Hetero UTR_3_PRIME
SBS Chr1 35780610 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g379000
SBS Chr1 42976858 A-G Hetero INTERGENIC
SBS Chr1 44165630 A-G Hetero INTERGENIC
SBS Chr2 11749602 C-T Hetero INTERGENIC
SBS Chr2 20873963 G-A Hetero INTERGENIC
SBS Chr2 28056933 A-C Hetero INTRON
SBS Chr2 31126006 G-T Hetero INTRON
SBS Chr3 2185619 A-T Hetero INTERGENIC
SBS Chr3 28686875 T-A Hetero UTR_5_PRIME
SBS Chr3 34550875 A-G Hetero INTERGENIC
SBS Chr4 8004736 G-A Hetero INTERGENIC
SBS Chr4 11930316 G-T Hetero INTERGENIC
SBS Chr4 13973521 C-T Hetero INTRON
SBS Chr4 17861836 A-T Hetero INTERGENIC
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 23442115 G-A Hetero UTR_3_PRIME
SBS Chr4 31068078 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 1690890 T-C Hetero UTR_3_PRIME
SBS Chr5 3995884 A-G Hetero INTRON
SBS Chr5 9931594 G-C Hetero INTERGENIC
SBS Chr5 9933313 G-A Hetero INTERGENIC
SBS Chr5 25650745 G-A Hetero INTERGENIC
SBS Chr6 11742561 G-C Hetero INTERGENIC
SBS Chr6 18211218 T-A Hetero INTERGENIC
SBS Chr6 29196064 C-A Hetero INTERGENIC
SBS Chr7 1897085 C-T Hetero INTERGENIC
SBS Chr7 5039410 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g061400
SBS Chr7 10379818 A-C Hetero INTERGENIC
SBS Chr7 22399361 C-T Hetero INTERGENIC
SBS Chr7 28033712 T-C Hetero INTERGENIC
SBS Chr7 28732543 T-C Hetero INTERGENIC
SBS Chr8 3749206 C-T Hetero INTERGENIC
SBS Chr8 3749209 G-T Hetero INTERGENIC
SBS Chr8 3749210 C-T Hetero INTERGENIC
SBS Chr8 13579266 A-C Hetero INTERGENIC
SBS Chr8 17777772 G-C Hetero INTERGENIC
SBS Chr8 18819046 A-G Hetero INTERGENIC
SBS Chr8 21754793 T-A Hetero UTR_3_PRIME
SBS Chr8 22857593 G-A Hetero INTERGENIC
SBS Chr9 18444183 C-T Hetero INTERGENIC
SBS Chr10 4616113 A-T Hetero INTERGENIC
SBS Chr10 12824105 G-A Hetero INTERGENIC
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr11 6820469 C-A Hetero INTRON
SBS Chr11 15446001 G-T Hetero INTERGENIC
SBS Chr11 18020513 C-T Hetero INTERGENIC
SBS Chr11 19375680 C-T Hetero INTRON
SBS Chr12 905040 C-T Hetero INTERGENIC
SBS Chr12 7564141 G-T Hetero INTERGENIC
SBS Chr12 7564142 C-T Hetero INTERGENIC
SBS Chr12 7754287 C-A Hetero INTERGENIC
SBS Chr12 10161670 C-T Hetero INTERGENIC
SBS Chr12 10161671 T-A Hetero INTERGENIC
SBS Chr12 12229121 T-A Hetero UTR_3_PRIME
SBS Chr12 13307261 A-G Hetero INTERGENIC
SBS Chr12 24555643 G-T Hetero INTRON
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3243958 3243963 5
Deletion Chr7 3661943 3661948 5
Deletion Chr6 5602736 5602737 1 OsKitaake06g074400
Deletion Chr1 9075015 9075017 2
Deletion Chr12 10179203 10179210 7
Deletion Chr5 11107145 11107151 6
Deletion Chr1 12299724 12299726 2
Deletion Chr2 12807575 12807585 10
Deletion Chr12 13857928 13857929 1
Deletion Chr4 14085309 14085310 1
Deletion Chr5 15144861 15144863 2 OsKitaake05g116100
Deletion Chr9 18866613 18866615 2
Deletion Chr11 19754598 19754613 15
Deletion Chr11 22543472 22543475 3 OsKitaake11g178801
Deletion Chr5 28121151 28121154 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 19752808 19752813 4 OsKitaake05g156700
Insertion Chr4 23355941 23355944 2
Insertion Chr9 4031692 4031694 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 3726060 4720037 OsKitaake06g063800
Inversion Chr6 3726071 4720461 OsKitaake06g063800
Inversion Chr8 7882879 8085884 OsKitaake08g072300
Inversion Chr8 7882890 8085286 OsKitaake08g072300
Inversion Chr7 13660095 13687689
Inversion Chr7 13660259 13687687
Inversion Chr10 14366012 14814993

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 22214812 Chr9 21637708 OsKitaake11g175900
Translocation Chr8 26560628 Chr2 35204625
Translocation Chr8 26569738 Chr2 35204627

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2168892	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	2614070	T-C	Hetero	INTRON
SBS	Chr1	3882348	A-C	Hetero	INTERGENIC
SBS	Chr1	6761754	T-C	Hetero	INTERGENIC
SBS	Chr1	8591797	G-A	Hetero	INTERGENIC
SBS	Chr1	10017074	T-C	Hetero	INTERGENIC
SBS	Chr1	10017075	T-C	Hetero	INTERGENIC
SBS	Chr1	35182773	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	35780610	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g379000
SBS	Chr1	42976858	A-G	Hetero	INTERGENIC
SBS	Chr1	44165630	A-G	Hetero	INTERGENIC
SBS	Chr2	11749602	C-T	Hetero	INTERGENIC
SBS	Chr2	20873963	G-A	Hetero	INTERGENIC
SBS	Chr2	28056933	A-C	Hetero	INTRON
SBS	Chr2	31126006	G-T	Hetero	INTRON
SBS	Chr3	2185619	A-T	Hetero	INTERGENIC
SBS	Chr3	28686875	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	34550875	A-G	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Hetero	INTERGENIC
SBS	Chr4	11930316	G-T	Hetero	INTERGENIC
SBS	Chr4	13973521	C-T	Hetero	INTRON
SBS	Chr4	17861836	A-T	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	23442115	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	31068078	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	1690890	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	3995884	A-G	Hetero	INTRON
SBS	Chr5	9931594	G-C	Hetero	INTERGENIC
SBS	Chr5	9933313	G-A	Hetero	INTERGENIC
SBS	Chr5	25650745	G-A	Hetero	INTERGENIC
SBS	Chr6	11742561	G-C	Hetero	INTERGENIC
SBS	Chr6	18211218	T-A	Hetero	INTERGENIC
SBS	Chr6	29196064	C-A	Hetero	INTERGENIC
SBS	Chr7	1897085	C-T	Hetero	INTERGENIC
SBS	Chr7	5039410	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g061400
SBS	Chr7	10379818	A-C	Hetero	INTERGENIC
SBS	Chr7	22399361	C-T	Hetero	INTERGENIC
SBS	Chr7	28033712	T-C	Hetero	INTERGENIC
SBS	Chr7	28732543	T-C	Hetero	INTERGENIC
SBS	Chr8	3749206	C-T	Hetero	INTERGENIC
SBS	Chr8	3749209	G-T	Hetero	INTERGENIC
SBS	Chr8	3749210	C-T	Hetero	INTERGENIC
SBS	Chr8	13579266	A-C	Hetero	INTERGENIC
SBS	Chr8	17777772	G-C	Hetero	INTERGENIC
SBS	Chr8	18819046	A-G	Hetero	INTERGENIC
SBS	Chr8	21754793	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	22857593	G-A	Hetero	INTERGENIC
SBS	Chr9	18444183	C-T	Hetero	INTERGENIC
SBS	Chr10	4616113	A-T	Hetero	INTERGENIC
SBS	Chr10	12824105	G-A	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr11	6820469	C-A	Hetero	INTRON
SBS	Chr11	15446001	G-T	Hetero	INTERGENIC
SBS	Chr11	18020513	C-T	Hetero	INTERGENIC
SBS	Chr11	19375680	C-T	Hetero	INTRON
SBS	Chr12	905040	C-T	Hetero	INTERGENIC
SBS	Chr12	7564141	G-T	Hetero	INTERGENIC
SBS	Chr12	7564142	C-T	Hetero	INTERGENIC
SBS	Chr12	7754287	C-A	Hetero	INTERGENIC
SBS	Chr12	10161670	C-T	Hetero	INTERGENIC
SBS	Chr12	10161671	T-A	Hetero	INTERGENIC
SBS	Chr12	12229121	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	13307261	A-G	Hetero	INTERGENIC
SBS	Chr12	24555643	G-T	Hetero	INTRON
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3243958	3243963	5
Deletion	Chr7	3661943	3661948	5
Deletion	Chr6	5602736	5602737	1	OsKitaake06g074400
Deletion	Chr1	9075015	9075017	2
Deletion	Chr12	10179203	10179210	7
Deletion	Chr5	11107145	11107151	6
Deletion	Chr1	12299724	12299726	2
Deletion	Chr2	12807575	12807585	10
Deletion	Chr12	13857928	13857929	1
Deletion	Chr4	14085309	14085310	1
Deletion	Chr5	15144861	15144863	2	OsKitaake05g116100
Deletion	Chr9	18866613	18866615	2
Deletion	Chr11	19754598	19754613	15
Deletion	Chr11	22543472	22543475	3	OsKitaake11g178801
Deletion	Chr5	28121151	28121154	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3726060	4720037	OsKitaake06g063800
Inversion	Chr6	3726071	4720461	OsKitaake06g063800
Inversion	Chr8	7882879	8085884	OsKitaake08g072300
Inversion	Chr8	7882890	8085286	OsKitaake08g072300
Inversion	Chr7	13660095	13687689
Inversion	Chr7	13660259	13687687
Inversion	Chr10	14366012	14814993

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes