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Mutant Information

Mutant Name	FN-130 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-130 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8591797 G-A Hetero INTERGENIC
SBS Chr1 27898667 C-G Hetero INTERGENIC
SBS Chr1 35182773 A-T Homo UTR_3_PRIME
SBS Chr1 42976858 A-G Hetero INTERGENIC
SBS Chr1 44165630 A-G Homo INTERGENIC
SBS Chr2 11749602 C-T Hetero INTERGENIC
SBS Chr2 28056933 A-C Hetero INTRON
SBS Chr2 34913848 T-A Hetero INTERGENIC
SBS Chr3 2185619 A-T Homo INTERGENIC
SBS Chr3 25844601 C-T Hetero INTERGENIC
SBS Chr3 28686875 T-A Homo UTR_5_PRIME
SBS Chr3 34550875 A-G Hetero INTERGENIC
SBS Chr4 8004736 G-A Homo INTERGENIC
SBS Chr4 11930316 G-T Homo INTERGENIC
SBS Chr4 17861836 A-T Homo INTERGENIC
SBS Chr5 1690890 T-C Hetero UTR_3_PRIME
SBS Chr5 25650745 G-A Hetero INTERGENIC
SBS Chr6 636365 C-A Hetero INTERGENIC
SBS Chr6 16362944 G-A Hetero INTERGENIC
SBS Chr6 20443086 C-T Hetero INTERGENIC
SBS Chr7 28732543 T-C Homo INTERGENIC
SBS Chr8 13579266 A-C Hetero INTERGENIC
SBS Chr9 18444183 C-T Homo INTERGENIC
SBS Chr10 1740471 C-T Hetero INTERGENIC
SBS Chr10 3748147 G-A Hetero INTERGENIC
SBS Chr10 4616113 A-T Hetero INTERGENIC
SBS Chr10 12824105 G-A Hetero INTERGENIC
SBS Chr11 18020513 C-T Hetero INTERGENIC
SBS Chr11 19375680 C-T Homo INTRON
SBS Chr11 27963530 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g229400
SBS Chr12 10161670 C-T Hetero INTERGENIC
SBS Chr12 10161671 T-A Hetero INTERGENIC
SBS Chr12 12229121 T-A Hetero UTR_3_PRIME
SBS Chr12 12229344 T-C Hetero UTR_3_PRIME
SBS Chr12 12912113 A-C Hetero INTERGENIC
SBS Chr12 13307261 A-G Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3243958 3243963 5
Deletion Chr2 3302341 3302349 8
Deletion Chr6 5602736 5602737 1 OsKitaake06g074400
Deletion Chr6 6390913 6390918 5
Deletion Chr9 7781620 7781628 8
Deletion Chr1 9075015 9075017 2
Deletion Chr12 10179203 10179210 7
Deletion Chr12 10179282 10179283 1
Deletion Chr5 11107145 11107151 6
Deletion Chr1 12299724 12299726 2
Deletion Chr2 12807575 12807585 10
Deletion Chr4 14085309 14085310 1
Deletion Chr7 14247543 14247552 9
Deletion Chr10 17571621 17571625 4
Deletion Chr12 18181957 18181958 1
Deletion Chr9 18866613 18866615 2
Deletion Chr11 19754598 19754613 15
Deletion Chr11 22543472 22543475 3 OsKitaake11g178801
Deletion Chr10 23073561 23073562 1
Deletion Chr8 26195111 26195119 8
Deletion Chr1 35145756 35145770 14

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 19752808 19752813 4 OsKitaake05g156700
Insertion Chr1 30253324 30253326 1 OsKitaake01g298000
Insertion Chr5 1594486 1594488 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 7882879 8085884 OsKitaake08g072300
Inversion Chr8 7882890 8085286 OsKitaake08g072300
Inversion Chr7 13660095 13687689
Inversion Chr7 13660259 13687687

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 26560628 Chr2 35204622
Translocation Chr8 26569738 Chr2 35204627

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8591797	G-A	Hetero	INTERGENIC
SBS	Chr1	27898667	C-G	Hetero	INTERGENIC
SBS	Chr1	35182773	A-T	Homo	UTR_3_PRIME
SBS	Chr1	42976858	A-G	Hetero	INTERGENIC
SBS	Chr1	44165630	A-G	Homo	INTERGENIC
SBS	Chr2	11749602	C-T	Hetero	INTERGENIC
SBS	Chr2	28056933	A-C	Hetero	INTRON
SBS	Chr2	34913848	T-A	Hetero	INTERGENIC
SBS	Chr3	2185619	A-T	Homo	INTERGENIC
SBS	Chr3	25844601	C-T	Hetero	INTERGENIC
SBS	Chr3	28686875	T-A	Homo	UTR_5_PRIME
SBS	Chr3	34550875	A-G	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Homo	INTERGENIC
SBS	Chr4	11930316	G-T	Homo	INTERGENIC
SBS	Chr4	17861836	A-T	Homo	INTERGENIC
SBS	Chr5	1690890	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	25650745	G-A	Hetero	INTERGENIC
SBS	Chr6	636365	C-A	Hetero	INTERGENIC
SBS	Chr6	16362944	G-A	Hetero	INTERGENIC
SBS	Chr6	20443086	C-T	Hetero	INTERGENIC
SBS	Chr7	28732543	T-C	Homo	INTERGENIC
SBS	Chr8	13579266	A-C	Hetero	INTERGENIC
SBS	Chr9	18444183	C-T	Homo	INTERGENIC
SBS	Chr10	1740471	C-T	Hetero	INTERGENIC
SBS	Chr10	3748147	G-A	Hetero	INTERGENIC
SBS	Chr10	4616113	A-T	Hetero	INTERGENIC
SBS	Chr10	12824105	G-A	Hetero	INTERGENIC
SBS	Chr11	18020513	C-T	Hetero	INTERGENIC
SBS	Chr11	19375680	C-T	Homo	INTRON
SBS	Chr11	27963530	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g229400
SBS	Chr12	10161670	C-T	Hetero	INTERGENIC
SBS	Chr12	10161671	T-A	Hetero	INTERGENIC
SBS	Chr12	12229121	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	12229344	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	12912113	A-C	Hetero	INTERGENIC
SBS	Chr12	13307261	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3243958	3243963	5
Deletion	Chr2	3302341	3302349	8
Deletion	Chr6	5602736	5602737	1	OsKitaake06g074400
Deletion	Chr6	6390913	6390918	5
Deletion	Chr9	7781620	7781628	8
Deletion	Chr1	9075015	9075017	2
Deletion	Chr12	10179203	10179210	7
Deletion	Chr12	10179282	10179283	1
Deletion	Chr5	11107145	11107151	6
Deletion	Chr1	12299724	12299726	2
Deletion	Chr2	12807575	12807585	10
Deletion	Chr4	14085309	14085310	1
Deletion	Chr7	14247543	14247552	9
Deletion	Chr10	17571621	17571625	4
Deletion	Chr12	18181957	18181958	1
Deletion	Chr9	18866613	18866615	2
Deletion	Chr11	19754598	19754613	15
Deletion	Chr11	22543472	22543475	3	OsKitaake11g178801
Deletion	Chr10	23073561	23073562	1
Deletion	Chr8	26195111	26195119	8
Deletion	Chr1	35145756	35145770	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7882879	8085884	OsKitaake08g072300
Inversion	Chr8	7882890	8085286	OsKitaake08g072300
Inversion	Chr7	13660095	13687689
Inversion	Chr7	13660259	13687687

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes