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Mutant Information

Mutant Name	FN-131 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-131 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 27910940 T-C Hetero INTRON
SBS Chr2 4082590 T-A Homo INTERGENIC
SBS Chr2 32641934 A-T Homo INTERGENIC
SBS Chr2 32642936 G-A Homo INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 16684441 G-T Hetero INTERGENIC
SBS Chr3 16844036 A-T Hetero INTERGENIC
SBS Chr3 19168096 G-A Hetero INTERGENIC
SBS Chr4 11290317 C-T Hetero INTERGENIC
SBS Chr4 18252548 T-A Hetero INTERGENIC
SBS Chr4 18534622 C-G Hetero INTERGENIC
SBS Chr4 24721255 C-T Hetero INTRON
SBS Chr4 25681035 G-T Hetero UTR_3_PRIME
SBS Chr4 30145981 T-A Hetero START_GAINED
SBS Chr5 8350197 G-A Hetero INTRON
SBS Chr5 9268086 T-C Hetero INTERGENIC
SBS Chr5 19063584 G-C Hetero INTERGENIC
SBS Chr6 7351078 C-A Homo INTERGENIC
SBS Chr6 7750214 G-A Homo SYNONYMOUS_CODING
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 541286 C-T Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 2270280 G-A Homo STOP_GAINED OsKitaake08g026900
SBS Chr8 2270550 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g026900
SBS Chr8 7338859 C-T Hetero INTERGENIC
SBS Chr8 8437925 T-A Hetero INTERGENIC
SBS Chr8 11728980 T-A Homo INTERGENIC
SBS Chr10 12994291 G-C Homo INTERGENIC
SBS Chr10 19378538 T-A Homo INTERGENIC
SBS Chr11 4528748 A-T Hetero INTRON
SBS Chr11 5892067 A-C Hetero INTERGENIC
SBS Chr11 13580230 T-A Hetero INTERGENIC
SBS Chr11 19828869 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 28001 46000 17999
Deletion Chr3 513817 513818 1
Deletion Chr5 719534 719536 2
Deletion Chr8 1440863 1440865 2
Deletion Chr6 1714718 1714720 2
Deletion Chr7 4742180 4742305 125
Deletion Chr10 5538388 5538390 2
Deletion Chr10 5652001 5815000 162999 10
Deletion Chr10 8706655 8706656 1
Deletion Chr8 10787850 10787942 92
Deletion Chr1 15229229 15229231 2
Deletion Chr1 17189332 17189497 165
Deletion Chr8 24323807 24323816 9
Deletion Chr2 30076771 30076775 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 26091602 26091605 2
Insertion Chr8 15565189 15565191 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10493911 11105643 OsKitaake09g065500
Inversion Chr9 13579219 13690706
Inversion Chr2 30131337 30660726 OsKitaake02g313800
Inversion Chr2 30660728 30750323 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 14889851 Chr3 35647075 OsKitaake03g391300
Translocation Chr9 14890226 Chr3 35647035 OsKitaake03g391300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	27910940	T-C	Hetero	INTRON
SBS	Chr2	4082590	T-A	Homo	INTERGENIC
SBS	Chr2	32641934	A-T	Homo	INTERGENIC
SBS	Chr2	32642936	G-A	Homo	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	16684441	G-T	Hetero	INTERGENIC
SBS	Chr3	16844036	A-T	Hetero	INTERGENIC
SBS	Chr3	19168096	G-A	Hetero	INTERGENIC
SBS	Chr4	11290317	C-T	Hetero	INTERGENIC
SBS	Chr4	18252548	T-A	Hetero	INTERGENIC
SBS	Chr4	18534622	C-G	Hetero	INTERGENIC
SBS	Chr4	24721255	C-T	Hetero	INTRON
SBS	Chr4	25681035	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	30145981	T-A	Hetero	START_GAINED
SBS	Chr5	8350197	G-A	Hetero	INTRON
SBS	Chr5	9268086	T-C	Hetero	INTERGENIC
SBS	Chr5	19063584	G-C	Hetero	INTERGENIC
SBS	Chr6	7351078	C-A	Homo	INTERGENIC
SBS	Chr6	7750214	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	541286	C-T	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	2270280	G-A	Homo	STOP_GAINED	OsKitaake08g026900
SBS	Chr8	2270550	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g026900
SBS	Chr8	7338859	C-T	Hetero	INTERGENIC
SBS	Chr8	8437925	T-A	Hetero	INTERGENIC
SBS	Chr8	11728980	T-A	Homo	INTERGENIC
SBS	Chr10	12994291	G-C	Homo	INTERGENIC
SBS	Chr10	19378538	T-A	Homo	INTERGENIC
SBS	Chr11	4528748	A-T	Hetero	INTRON
SBS	Chr11	5892067	A-C	Hetero	INTERGENIC
SBS	Chr11	13580230	T-A	Hetero	INTERGENIC
SBS	Chr11	19828869	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	28001	46000	17999
Deletion	Chr3	513817	513818	1
Deletion	Chr5	719534	719536	2
Deletion	Chr8	1440863	1440865	2
Deletion	Chr6	1714718	1714720	2
Deletion	Chr7	4742180	4742305	125
Deletion	Chr10	5538388	5538390	2
Deletion	Chr10	5652001	5815000	162999	10
Deletion	Chr10	8706655	8706656	1
Deletion	Chr8	10787850	10787942	92
Deletion	Chr1	15229229	15229231	2
Deletion	Chr1	17189332	17189497	165
Deletion	Chr8	24323807	24323816	9
Deletion	Chr2	30076771	30076775	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10493911	11105643	OsKitaake09g065500
Inversion	Chr9	13579219	13690706
Inversion	Chr2	30131337	30660726	OsKitaake02g313800
Inversion	Chr2	30660728	30750323	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes