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Mutant Information

Mutant Name	FN-132 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-132 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23955300 A-C Hetero INTERGENIC
SBS Chr1 24852682 T-A Hetero INTERGENIC
SBS Chr1 24852683 C-A Hetero INTERGENIC
SBS Chr2 6163585 G-A Homo INTERGENIC
SBS Chr2 8267233 G-T Hetero INTERGENIC
SBS Chr2 28631446 C-A Hetero INTERGENIC
SBS Chr4 7566834 G-T Homo INTERGENIC
SBS Chr4 11437147 A-C Homo INTERGENIC
SBS Chr4 11791615 T-C Homo INTERGENIC
SBS Chr4 13292167 A-G Homo INTERGENIC
SBS Chr4 25027810 G-A Hetero INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr4 34668943 C-T Hetero INTERGENIC
SBS Chr4 35088129 A-G Homo INTRON
SBS Chr5 17524213 G-A Homo INTERGENIC
SBS Chr6 5573902 G-T Homo INTERGENIC
SBS Chr6 6931974 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g089800
SBS Chr6 19006572 T-G Hetero INTRON
SBS Chr6 22138220 G-A Homo INTERGENIC
SBS Chr7 3722862 C-T Hetero INTRON
SBS Chr7 21365422 T-A Hetero INTERGENIC
SBS Chr7 23378358 G-A Hetero INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr7 26229232 T-A Hetero INTRON
SBS Chr8 5413416 T-C Homo START_GAINED
SBS Chr8 7122102 C-A Homo INTERGENIC
SBS Chr8 13958632 T-G Hetero UTR_3_PRIME
SBS Chr10 4163526 C-T Hetero INTERGENIC
SBS Chr10 15021590 A-G Homo INTERGENIC
SBS Chr10 21147959 G-C Hetero INTERGENIC
SBS Chr11 8546799 G-A Hetero INTERGENIC
SBS Chr11 14816752 G-A Hetero INTERGENIC
SBS Chr12 3096864 A-T Hetero INTERGENIC
SBS Chr12 13974545 A-T Homo INTERGENIC
SBS Chr12 14343071 C-A Homo INTERGENIC
SBS Chr12 24153897 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6280035 6280155 120
Deletion Chr2 9001001 9218000 216999 25
Deletion Chr9 9701883 9701889 6
Deletion Chr10 10171747 10171755 8
Deletion Chr5 10765972 10765974 2
Deletion Chr9 11055160 11055167 7
Deletion Chr11 11856772 11856774 2
Deletion Chr6 13031947 13031949 2
Deletion Chr3 14071001 14149000 77999 7
Deletion Chr3 16392914 16392916 2 OsKitaake03g207900
Deletion Chr2 18206990 18206992 2
Deletion Chr4 22947500 22947503 3 OsKitaake04g138700
Deletion Chr3 29202137 29202139 2 OsKitaake03g303800
Deletion Chr3 29305494 29305496 2
Deletion Chr1 40652580 40652585 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 821856 821859 2
Insertion Chr5 30188951 30188954 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 7607452 7716726
Inversion Chr9 7607458 7716589
Inversion Chr2 8474356 9350920
Inversion Chr2 8985782 9216483
Inversion Chr2 8985783 9001275 OsKitaake02g112800
Inversion Chr11 11882111 12076471 OsKitaake11g111800
Inversion Chr3 14148135 14391202 OsKitaake03g184800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23955300	A-C	Hetero	INTERGENIC
SBS	Chr1	24852682	T-A	Hetero	INTERGENIC
SBS	Chr1	24852683	C-A	Hetero	INTERGENIC
SBS	Chr2	6163585	G-A	Homo	INTERGENIC
SBS	Chr2	8267233	G-T	Hetero	INTERGENIC
SBS	Chr2	28631446	C-A	Hetero	INTERGENIC
SBS	Chr4	7566834	G-T	Homo	INTERGENIC
SBS	Chr4	11437147	A-C	Homo	INTERGENIC
SBS	Chr4	11791615	T-C	Homo	INTERGENIC
SBS	Chr4	13292167	A-G	Homo	INTERGENIC
SBS	Chr4	25027810	G-A	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr4	34668943	C-T	Hetero	INTERGENIC
SBS	Chr4	35088129	A-G	Homo	INTRON
SBS	Chr5	17524213	G-A	Homo	INTERGENIC
SBS	Chr6	5573902	G-T	Homo	INTERGENIC
SBS	Chr6	6931974	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g089800
SBS	Chr6	19006572	T-G	Hetero	INTRON
SBS	Chr6	22138220	G-A	Homo	INTERGENIC
SBS	Chr7	3722862	C-T	Hetero	INTRON
SBS	Chr7	21365422	T-A	Hetero	INTERGENIC
SBS	Chr7	23378358	G-A	Hetero	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr7	26229232	T-A	Hetero	INTRON
SBS	Chr8	5413416	T-C	Homo	START_GAINED
SBS	Chr8	7122102	C-A	Homo	INTERGENIC
SBS	Chr8	13958632	T-G	Hetero	UTR_3_PRIME
SBS	Chr10	4163526	C-T	Hetero	INTERGENIC
SBS	Chr10	15021590	A-G	Homo	INTERGENIC
SBS	Chr10	21147959	G-C	Hetero	INTERGENIC
SBS	Chr11	8546799	G-A	Hetero	INTERGENIC
SBS	Chr11	14816752	G-A	Hetero	INTERGENIC
SBS	Chr12	3096864	A-T	Hetero	INTERGENIC
SBS	Chr12	13974545	A-T	Homo	INTERGENIC
SBS	Chr12	14343071	C-A	Homo	INTERGENIC
SBS	Chr12	24153897	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6280035	6280155	120
Deletion	Chr2	9001001	9218000	216999	25
Deletion	Chr9	9701883	9701889	6
Deletion	Chr10	10171747	10171755	8
Deletion	Chr5	10765972	10765974	2
Deletion	Chr9	11055160	11055167	7
Deletion	Chr11	11856772	11856774	2
Deletion	Chr6	13031947	13031949	2
Deletion	Chr3	14071001	14149000	77999	7
Deletion	Chr3	16392914	16392916	2	OsKitaake03g207900
Deletion	Chr2	18206990	18206992	2
Deletion	Chr4	22947500	22947503	3	OsKitaake04g138700
Deletion	Chr3	29202137	29202139	2	OsKitaake03g303800
Deletion	Chr3	29305494	29305496	2
Deletion	Chr1	40652580	40652585	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7607452	7716726
Inversion	Chr9	7607458	7716589
Inversion	Chr2	8474356	9350920
Inversion	Chr2	8985782	9216483
Inversion	Chr2	8985783	9001275	OsKitaake02g112800
Inversion	Chr11	11882111	12076471	OsKitaake11g111800
Inversion	Chr3	14148135	14391202	OsKitaake03g184800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes