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Mutant Information

Mutant Name	FN-133 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-133 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3491268 T-A Hetero INTRON
SBS Chr1 15771364 C-A Hetero INTERGENIC
SBS Chr1 16484590 A-G Homo INTERGENIC
SBS Chr1 20515439 C-G Hetero INTERGENIC
SBS Chr1 21241811 G-T Hetero INTERGENIC
SBS Chr1 21698850 T-A Homo INTRON
SBS Chr1 24730651 A-T Hetero INTERGENIC
SBS Chr1 29378704 T-C Homo UTR_3_PRIME
SBS Chr1 43643174 G-A Homo INTERGENIC
SBS Chr2 13054817 C-T Homo INTERGENIC
SBS Chr2 18626403 T-G Hetero INTRON
SBS Chr2 18634643 G-T Hetero INTRON
SBS Chr2 19560721 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 31244624 T-C Hetero INTERGENIC
SBS Chr2 35427972 C-A Hetero INTERGENIC
SBS Chr3 3301450 T-G Hetero INTERGENIC
SBS Chr3 15961942 A-T Homo UTR_5_PRIME
SBS Chr4 6363392 T-C Hetero INTRON
SBS Chr5 2258284 C-T Homo INTERGENIC
SBS Chr6 20072016 A-T Hetero INTERGENIC
SBS Chr6 22794150 C-A Hetero INTERGENIC
SBS Chr7 9056504 G-A Hetero INTERGENIC
SBS Chr7 24568757 T-A Homo NON_SYNONYMOUS_CODING OsKitaake07g219000
SBS Chr7 29314969 A-G Hetero INTERGENIC
SBS Chr8 687565 T-A Homo INTERGENIC
SBS Chr8 18401682 T-C Hetero INTERGENIC
SBS Chr9 11379480 C-T Homo INTERGENIC
SBS Chr10 9806594 A-G Hetero UTR_3_PRIME
SBS Chr10 19793076 C-A Homo INTRON
SBS Chr11 6646666 G-A Hetero INTERGENIC
SBS Chr11 14008670 A-G Hetero INTERGENIC
SBS Chr12 7924601 G-A Homo INTERGENIC
SBS Chr12 17230660 C-G Hetero INTERGENIC
SBS Chr12 25345735 T-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3302059 3302060 1
Deletion Chr11 5995182 5995183 1
Deletion Chr7 7524973 7524989 16
Deletion Chr8 7725273 7725274 1
Deletion Chr6 8735001 8795000 59999 OsKitaake06g106800
Deletion Chr11 9436005 9436008 3
Deletion Chr2 10417263 10417265 2
Deletion Chr10 10992192 10992194 2 OsKitaake10g065000
Deletion Chr8 13924848 13924849 1
Deletion Chr10 14047221 14047232 11
Deletion Chr7 15539127 15539137 10
Deletion Chr7 16205121 16205123 2
Deletion Chr6 16860001 16870000 9999
Deletion Chr11 18242001 18259000 16999
Deletion Chr12 19380985 19380986 1 OsKitaake12g145100
Deletion Chr6 19555001 19566000 10999
Deletion Chr12 19857032 19857039 7
Deletion Chr3 20096001 20108000 11999
Deletion Chr1 22042499 22042502 3
Deletion Chr1 25884090 25884092 2
Deletion Chr3 27724068 27724089 21
Deletion Chr3 33022001 33074000 51999 11
Deletion Chr3 34359191 34359198 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 615099 615102 2
Insertion Chr8 21521242 21521246 3
Insertion Chr10 3785395 3785398 2
Insertion Chr4 2917658 2917660 1
Insertion Chr5 12712480 12712482 1
Insertion Chr11 12450264 12450279 14

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 3063902 3154273 OsKitaake02g045200
Inversion Chr2 3064142 3154278 OsKitaake02g045200
Inversion Chr3 4672549 4672652 OsKitaake03g067700
Inversion Chr10 7178735 7178987 OsKitaake10g047100
Inversion Chr4 11433116 11433349
Inversion Chr4 19070682 19420408
Inversion Chr2 21654820 21654926

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5084035 Chr3 24787112
Translocation Chr9 8427454 Chr4 18859264
Translocation Chr4 19420388 Chr2 18473879
Translocation Chr7 24524567 Chr2 3064141 OsKitaake07g218500
Translocation Chr7 24524604 Chr2 3063904 OsKitaake07g218500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3491268	T-A	Hetero	INTRON
SBS	Chr1	15771364	C-A	Hetero	INTERGENIC
SBS	Chr1	16484590	A-G	Homo	INTERGENIC
SBS	Chr1	20515439	C-G	Hetero	INTERGENIC
SBS	Chr1	21241811	G-T	Hetero	INTERGENIC
SBS	Chr1	21698850	T-A	Homo	INTRON
SBS	Chr1	24730651	A-T	Hetero	INTERGENIC
SBS	Chr1	29378704	T-C	Homo	UTR_3_PRIME
SBS	Chr1	43643174	G-A	Homo	INTERGENIC
SBS	Chr2	13054817	C-T	Homo	INTERGENIC
SBS	Chr2	18626403	T-G	Hetero	INTRON
SBS	Chr2	18634643	G-T	Hetero	INTRON
SBS	Chr2	19560721	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	31244624	T-C	Hetero	INTERGENIC
SBS	Chr2	35427972	C-A	Hetero	INTERGENIC
SBS	Chr3	3301450	T-G	Hetero	INTERGENIC
SBS	Chr3	15961942	A-T	Homo	UTR_5_PRIME
SBS	Chr4	6363392	T-C	Hetero	INTRON
SBS	Chr5	2258284	C-T	Homo	INTERGENIC
SBS	Chr6	20072016	A-T	Hetero	INTERGENIC
SBS	Chr6	22794150	C-A	Hetero	INTERGENIC
SBS	Chr7	9056504	G-A	Hetero	INTERGENIC
SBS	Chr7	24568757	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g219000
SBS	Chr7	29314969	A-G	Hetero	INTERGENIC
SBS	Chr8	687565	T-A	Homo	INTERGENIC
SBS	Chr8	18401682	T-C	Hetero	INTERGENIC
SBS	Chr9	11379480	C-T	Homo	INTERGENIC
SBS	Chr10	9806594	A-G	Hetero	UTR_3_PRIME
SBS	Chr10	19793076	C-A	Homo	INTRON
SBS	Chr11	6646666	G-A	Hetero	INTERGENIC
SBS	Chr11	14008670	A-G	Hetero	INTERGENIC
SBS	Chr12	7924601	G-A	Homo	INTERGENIC
SBS	Chr12	17230660	C-G	Hetero	INTERGENIC
SBS	Chr12	25345735	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3302059	3302060	1
Deletion	Chr11	5995182	5995183	1
Deletion	Chr7	7524973	7524989	16
Deletion	Chr8	7725273	7725274	1
Deletion	Chr6	8735001	8795000	59999	OsKitaake06g106800
Deletion	Chr11	9436005	9436008	3
Deletion	Chr2	10417263	10417265	2
Deletion	Chr10	10992192	10992194	2	OsKitaake10g065000
Deletion	Chr8	13924848	13924849	1
Deletion	Chr10	14047221	14047232	11
Deletion	Chr7	15539127	15539137	10
Deletion	Chr7	16205121	16205123	2
Deletion	Chr6	16860001	16870000	9999
Deletion	Chr11	18242001	18259000	16999
Deletion	Chr12	19380985	19380986	1	OsKitaake12g145100
Deletion	Chr6	19555001	19566000	10999
Deletion	Chr12	19857032	19857039	7
Deletion	Chr3	20096001	20108000	11999
Deletion	Chr1	22042499	22042502	3
Deletion	Chr1	25884090	25884092	2
Deletion	Chr3	27724068	27724089	21
Deletion	Chr3	33022001	33074000	51999	11
Deletion	Chr3	34359191	34359198	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3063902	3154273	OsKitaake02g045200
Inversion	Chr2	3064142	3154278	OsKitaake02g045200
Inversion	Chr3	4672549	4672652	OsKitaake03g067700
Inversion	Chr10	7178735	7178987	OsKitaake10g047100
Inversion	Chr4	11433116	11433349
Inversion	Chr4	19070682	19420408
Inversion	Chr2	21654820	21654926

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes