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| Mutant Information |
|---|
| Mutant Name | FN-134 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-134 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20930176 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 15017004 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 21135056 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9445720 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21775888 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 9976440 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 24167910 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24167912 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4768756 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25850856 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 27314703 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 7852601 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g086300 |
| SBS | Chr7 | 7852602 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g086300 |
| SBS | Chr7 | 9006968 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13778208 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14453029 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18057881 | G-T | Homo | UTR_5_PRIME | |
| SBS | Chr11 | 19411988 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6653764 | A-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1423020 | 1423145 | 125 | |
| Deletion | Chr2 | 4079375 | 4079376 | 1 | |
| Deletion | Chr4 | 4140001 | 4622000 | 481999 | 17 |
| Deletion | Chr11 | 6607001 | 6724000 | 116999 | 14 |
| Deletion | Chr10 | 7076001 | 7090000 | 13999 | |
| Deletion | Chr12 | 9733001 | 9752000 | 18999 | |
| Deletion | Chr10 | 10410372 | 10410377 | 5 | |
| Deletion | Chr3 | 10835124 | 10835126 | 2 | |
| Deletion | Chr12 | 11652227 | 11652538 | 311 | |
| Deletion | Chr11 | 12641742 | 12641744 | 2 | |
| Deletion | Chr10 | 14043001 | 14059000 | 15999 | OsKitaake10g087200 |
| Deletion | Chr11 | 18241001 | 18257000 | 15999 | |
| Deletion | Chr3 | 22191001 | 22203000 | 11999 | |
| Deletion | Chr7 | 23198334 | 23198424 | 90 | |
| Deletion | Chr3 | 27236001 | 27274000 | 37999 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 18215924 | 18215926 | 1 | |
| Insertion | Chr5 | 12532511 | 12532513 | 1 |