Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-135 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-135 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9424368 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 9424369 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g120900 |
| SBS | Chr1 | 26268205 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27161497 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15597757 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1052011 | G-C | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 20128461 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21063934 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33247585 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 11451542 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 21169158 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g170600 |
| SBS | Chr5 | 24602590 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g200200 |
| SBS | Chr5 | 24993752 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6534438 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 29202091 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12863584 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 23931096 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g184300 |
| SBS | Chr10 | 3756413 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29047289 | C-T | Homo | INTRON |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1686444 | 1686449 | 5 | OsKitaake12g025400 |
| Deletion | Chr9 | 2002691 | 2002700 | 9 | |
| Deletion | Chr7 | 4586500 | 4586505 | 5 | |
| Deletion | Chr4 | 5578527 | 5578537 | 10 | |
| Deletion | Chr10 | 6327864 | 6327868 | 4 | |
| Deletion | Chr1 | 6527491 | 6527503 | 12 | |
| Deletion | Chr7 | 8608070 | 8608155 | 85 | |
| Deletion | Chr5 | 9532774 | 9532775 | 1 | |
| Deletion | Chr6 | 9539974 | 9539975 | 1 | |
| Deletion | Chr11 | 10740552 | 10740553 | 1 | |
| Deletion | Chr2 | 10819002 | 10819003 | 1 | |
| Deletion | Chr11 | 11811686 | 11811694 | 8 | |
| Deletion | Chr6 | 13486115 | 13486123 | 8 | |
| Deletion | Chr1 | 19667519 | 19667530 | 11 | |
| Deletion | Chr6 | 20039487 | 20039498 | 11 | |
| Deletion | Chr6 | 20210590 | 20210738 | 148 | |
| Deletion | Chr5 | 21564463 | 21564469 | 6 | |
| Deletion | Chr7 | 24572323 | 24572328 | 5 | |
| Deletion | Chr7 | 25406982 | 25407303 | 321 | |
| Deletion | Chr5 | 25645189 | 25645190 | 1 | |
| Deletion | Chr6 | 25669165 | 25669168 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 36157070 | 36157072 | 1 | |
| Insertion | Chr12 | 4797427 | 4797430 | 2 | |
| Insertion | Chr6 | 7838 | 7840 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 9164867 | 10034958 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 8766117 | Chr1 | 7044641 | |
| Translocation | Chr12 | 15001777 | Chr8 | 28600317 | OsKitaake08g245200 |
| Translocation | Chr12 | 15002017 | Chr8 | 28600207 | OsKitaake08g245200 |
| Translocation | Chr12 | 15002039 | Chr6 | 9164912 | |
| Translocation | Chr12 | 15002042 | Chr3 | 6546788 |