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| Mutant Information |
|---|
| Mutant Name | FN-136 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-136 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14410461 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 39431230 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 473384 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g006900 |
| SBS | Chr2 | 24515699 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28063339 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 11563286 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 36082009 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 33679073 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33679074 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2288270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 4408341 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 4910348 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 9683038 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16827302 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20714053 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 13853843 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28808424 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29141418 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 1337862 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10567258 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g095200 |
| SBS | Chr8 | 27690920 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 852269 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 11952162 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 16001953 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 10395213 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10395217 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15317431 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15317432 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20526745 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21727799 | G-A | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 852279 | 852284 | 5 | |
| Deletion | Chr2 | 4130642 | 4130643 | 1 | |
| Deletion | Chr1 | 5833669 | 5833679 | 10 | |
| Deletion | Chr1 | 9924658 | 9924672 | 14 | |
| Deletion | Chr1 | 10338337 | 10338358 | 21 | |
| Deletion | Chr10 | 11075380 | 11075388 | 8 | |
| Deletion | Chr1 | 11569861 | 11570023 | 162 | |
| Deletion | Chr10 | 12130213 | 12130215 | 2 | |
| Deletion | Chr11 | 12781561 | 12781571 | 10 | |
| Deletion | Chr1 | 13613786 | 13613799 | 13 | |
| Deletion | Chr6 | 14377328 | 14377331 | 3 | |
| Deletion | Chr10 | 15762366 | 15762454 | 88 | |
| Deletion | Chr2 | 19738293 | 19738295 | 2 | OsKitaake02g193000 |
| Deletion | Chr4 | 22155693 | 22155694 | 1 | |
| Deletion | Chr10 | 23142647 | 23142651 | 4 | |
| Deletion | Chr7 | 24603228 | 24603231 | 3 | |
| Deletion | Chr5 | 28310605 | 28310612 | 7 | |
| Deletion | Chr3 | 29199663 | 29199667 | 4 | |
| Deletion | Chr5 | 30258420 | 30258421 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 26682322 | 26682325 | 2 | |
| Insertion | Chr6 | 31040491 | 31040526 | 34 | |
| Insertion | Chr11 | 19465609 | 19465612 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 3127628 | Chr4 | 35093554 | |
| Translocation | Chr11 | 3128861 | Chr4 | 35093554 |