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Mutant Information

Mutant Name	FN-138 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-138 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2924239	T-A	Homo	INTERGENIC
SBS	Chr1	2924240	G-A	Homo	INTERGENIC
SBS	Chr1	4769549	A-G	Hetero	INTRON
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr2	7264577	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g097400
SBS	Chr3	31592023	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	14128965	G-A	Homo	INTERGENIC
SBS	Chr7	8081545	T-C	Homo	INTERGENIC
SBS	Chr10	12025236	A-C	Hetero	INTERGENIC
SBS	Chr10	21543140	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	10128249	T-C	Hetero	INTRON
SBS	Chr11	16326584	G-A	Hetero	INTERGENIC
SBS	Chr12	8519362	C-G	Homo	INTERGENIC
SBS	Chr12	26592333	C-T	Hetero	INTRON

Deletions: 9

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3925001	3955000	29999	2
Deletion	Chr10	5154001	5163000	8999	2
Deletion	Chr6	10103979	10103980	1
Deletion	Chr4	10335753	10335754	1
Deletion	Chr10	12423001	12495000	71999	8
Deletion	Chr11	15165885	15165887	2
Deletion	Chr11	15827769	15827772	3
Deletion	Chr1	17194125	17194280	155
Deletion	Chr2	18906001	18919000	12999	6

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9211087	9213681
Inversion	Chr8	9211097	9213687
Inversion	Chr2	18904758	19075670	OsKitaake02g185200
Inversion	Chr2	18918279	19075688	OsKitaake02g185500

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	272056	Chr2	19385732	OsKitaake08g003700
Translocation	Chr8	275585	Chr2	20355586	OsKitaake08g003800
Translocation	Chr8	275604	Chr2	19211077	OsKitaake08g003800
Translocation	Chr8	399374	Chr2	19385725	OsKitaake08g006200