Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-139 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-139 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27409311 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 29369413 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29486454 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 40344420 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 41728547 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 942384 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 24704611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24704612 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35141232 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 3130573 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26661200 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 26661205 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11479140 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10533099 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10533104 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 11581331 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16622522 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21314643 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 22713771 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 23049179 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 28012337 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29400548 | G-T | Hetero | INTRON | |
| SBS | Chr7 | 12842233 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2793099 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13629866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 3095780 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 6700712 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4667447 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8493162 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18183556 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g133550 |
| SBS | Chr12 | 19051634 | G-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 4754166 | 4754175 | 9 | OsKitaake10g034600 |
| Deletion | Chr4 | 7283704 | 7283709 | 5 | |
| Deletion | Chr8 | 8689734 | 8689736 | 2 | OsKitaake08g079900 |
| Deletion | Chr9 | 8756621 | 8756623 | 2 | |
| Deletion | Chr8 | 9318319 | 9318320 | 1 | |
| Deletion | Chr9 | 13144171 | 13144520 | 349 | |
| Deletion | Chr6 | 20210590 | 20210738 | 148 | |
| Deletion | Chr4 | 20967153 | 20967159 | 6 | |
| Deletion | Chr3 | 26891176 | 26891187 | 11 | |
| Deletion | Chr8 | 28596001 | 28620000 | 23999 | 3 |
| Deletion | Chr2 | 34054890 | 34054897 | 7 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 35603432 | 35603434 | 1 | OsKitaake03g390700  |
| Insertion | Chr5 | 2837653 | 2837656 | 2 | |
| Insertion | Chr9 | 10798347 | 10798350 | 2 | |
| Insertion | Chr10 | 17778676 | 17778680 | 3 | |
| Insertion | Chr4 | 11570664 | 11570667 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 4208258 | 4258716 | OsKitaake11g057200 |
| Inversion | Chr11 | 4208277 | 4258837 | OsKitaake11g057200 |
| Inversion | Chr3 | 23525233 | 23906689 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 10674996 | Chr3 | 6129300 | 2 |
| Translocation | Chr8 | 21716635 | Chr6 | 2395480 | OsKitaake08g164200 |