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Mutant Information |
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Mutant Name | FN-14 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-14 Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 9021906 | G-A | Hetero | INTERGENIC | |
SBS | Chr1 | 21340702 | G-T | Homo | INTERGENIC | |
SBS | Chr1 | 36874524 | C-T | Hetero | INTRON | |
SBS | Chr1 | 38980903 | T-A | Hetero | INTERGENIC | |
SBS | Chr1 | 39278549 | T-G | Hetero | INTERGENIC | |
SBS | Chr2 | 11571875 | T-C | Hetero | INTRON | |
SBS | Chr3 | 4386512 | C-T | Homo | UTR_5_PRIME | |
SBS | Chr3 | 11849878 | A-G | Homo | INTERGENIC | |
SBS | Chr4 | 2985226 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 8146349 | C-T | Homo | INTERGENIC | |
SBS | Chr4 | 16660033 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 18162567 | G-C | Homo | INTERGENIC | |
SBS | Chr4 | 23832420 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 27587271 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 29316980 | T-G | Hetero | INTERGENIC | |
SBS | Chr4 | 34901981 | G-A | Homo | INTRON | |
SBS | Chr5 | 737379 | G-C | Hetero | INTRON | |
SBS | Chr5 | 18785210 | A-T | Hetero | INTERGENIC | |
SBS | Chr5 | 20504406 | G-A | Homo | INTERGENIC | |
SBS | Chr5 | 25455288 | G-A | Hetero | INTERGENIC | |
SBS | Chr6 | 105820 | G-A | Homo | INTERGENIC | |
SBS | Chr6 | 17336636 | G-A | Homo | INTERGENIC | |
SBS | Chr6 | 21534432 | G-T | Hetero | INTERGENIC | |
SBS | Chr8 | 870202 | T-G | Hetero | INTERGENIC | |
SBS | Chr8 | 3374316 | C-T | Hetero | INTERGENIC | |
SBS | Chr8 | 8674391 | A-T | Homo | INTERGENIC | |
SBS | Chr8 | 8674542 | C-G | Homo | INTERGENIC | |
SBS | Chr8 | 17213715 | T-C | Homo | INTERGENIC | |
SBS | Chr8 | 25640228 | G-T | Hetero | INTERGENIC | |
SBS | Chr10 | 4888517 | A-G | Homo | INTERGENIC | |
SBS | Chr10 | 19519300 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g143400 |
SBS | Chr10 | 23310594 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 5613894 | T-G | Homo | INTERGENIC | |
SBS | Chr11 | 18532974 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 10503989 | G-A | Homo | INTERGENIC | |
SBS | Chr12 | 11907976 | A-G | Hetero | INTERGENIC | |
SBS | Chr12 | 16283989 | A-C | Hetero | INTERGENIC | |
SBS | Chr12 | 26390667 | A-G | Homo | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr5 | 16307085 | 16307282 | 197 | |
Deletion | Chr5 | 17756160 | 17756168 | 8 | |
Deletion | Chr6 | 18400668 | 18400669 | 1 | |
Deletion | Chr2 | 19462207 | 19462311 | 104 | |
Deletion | Chr6 | 20857001 | 20932000 | 74999 | 6 |
Deletion | Chr11 | 22511001 | 22541000 | 29999 | OsKitaake11g178700 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 13087880 | 13087883 | 2 | |
Insertion | Chr5 | 20035141 | 20035143 | 1 | |
Insertion | Chr5 | 30219464 | 30219472 | 7 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr12 | 3822876 | 4210365 | |
Inversion | Chr12 | 3822904 | 4210372 | |
Inversion | Chr6 | 20860946 | 21006174 | OsKitaake06g186200 |