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| Mutant Information |
|---|
| Mutant Name | FN-140 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-140 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 345078 | C-T | Homo | INTRON | |
| SBS | Chr1 | 14432815 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14887706 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34732216 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 9322112 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g115850 |
| SBS | Chr3 | 23838774 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24057107 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 29737178 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g310600 |
| SBS | Chr3 | 30550757 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 46322 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 5702321 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 16016982 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 18398348 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 18945363 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9543994 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 21431063 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 26618575 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16863484 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26588154 | C-T | Homo | INTRON | |
| SBS | Chr7 | 29188448 | G-T | Hetero | START_GAINED | |
| SBS | Chr9 | 1454506 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4070385 | C-G | Hetero | INTRON | |
| SBS | Chr9 | 15530379 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 15530380 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 19115769 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g153300 |
| SBS | Chr9 | 19598619 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 20770146 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 17408779 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3796277 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19120099 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19120100 | C-A | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 806842 | 806855 | 13 | |
| Deletion | Chr3 | 3539854 | 3539856 | 2 | OsKitaake03g049300 |
| Deletion | Chr6 | 3562480 | 3562493 | 13 | |
| Deletion | Chr9 | 4098001 | 4110000 | 11999 | OsKitaake09g022100 |
| Deletion | Chr3 | 4499896 | 4499898 | 2 | |
| Deletion | Chr5 | 4991142 | 4991146 | 4 | |
| Deletion | Chr4 | 10800644 | 10800650 | 6 | |
| Deletion | Chr12 | 13853954 | 13853956 | 2 | |
| Deletion | Chr5 | 16089968 | 16089969 | 1 | |
| Deletion | Chr3 | 16414126 | 16414134 | 8 | |
| Deletion | Chr3 | 17064656 | 17064657 | 1 | OsKitaake03g212200 |
| Deletion | Chr1 | 20376790 | 20376791 | 1 | |
| Deletion | Chr3 | 23859675 | 23859679 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 6735236 | 6735239 | 2 | |
| Insertion | Chr7 | 25814017 | 25814019 | 1 |