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| Mutant Information |
|---|
| Mutant Name | FN-141 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-141 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16753972 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16885623 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38366620 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31620879 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18458410 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 37663667 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10237104 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14579424 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31422864 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 6301154 | T-A | Homo | INTRON | |
| SBS | Chr5 | 6301168 | G-A | Homo | INTRON | |
| SBS | Chr5 | 12311556 | C-A | Homo | INTRON | |
| SBS | Chr6 | 21287600 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 21326359 | G-T | Homo | INTRON | |
| SBS | Chr6 | 21326360 | T-A | Homo | INTRON | |
| SBS | Chr7 | 11132208 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16258629 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 1276237 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2343692 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14440424 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 24699549 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7060859 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23892121 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 2042811 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 7009042 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g080300 |
| SBS | Chr11 | 18659975 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 8551975 | G-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1776600 | 1776613 | 13 | OsKitaake06g021400 |
| Deletion | Chr1 | 2695784 | 2695791 | 7 | |
| Deletion | Chr4 | 3856528 | 3856540 | 12 | |
| Deletion | Chr8 | 5384001 | 5407000 | 22999 | 4 |
| Deletion | Chr1 | 5842969 | 5842974 | 5 | OsKitaake01g074000 |
| Deletion | Chr5 | 6140001 | 6290000 | 149999 | 14 |
| Deletion | Chr2 | 6402311 | 6402316 | 5 | |
| Deletion | Chr12 | 10490945 | 10490946 | 1 | |
| Deletion | Chr12 | 13768938 | 13769022 | 84 | |
| Deletion | Chr3 | 16326626 | 16326640 | 14 | |
| Deletion | Chr6 | 18586985 | 18586988 | 3 | |
| Deletion | Chr6 | 22533001 | 22550000 | 16999 | 3 |
| Deletion | Chr8 | 22567254 | 22567259 | 5 | |
| Deletion | Chr6 | 23879331 | 23879332 | 1 | OsKitaake06g211000 |
| Deletion | Chr1 | 28068828 | 28068831 | 3 | |
| Deletion | Chr5 | 30167792 | 30167793 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 39090669 | 39090672 | 2 | |
| Insertion | Chr11 | 5878654 | 5878656 | 1 | |
| Insertion | Chr12 | 7869674 | 7869677 | 2 |