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Mutant Information

Mutant Name	FN-142 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-142 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2262539 G-A Hetero INTERGENIC
SBS Chr1 12110932 G-C Hetero INTERGENIC
SBS Chr1 14825672 G-A Homo INTERGENIC
SBS Chr1 23252334 G-A Homo INTERGENIC
SBS Chr1 29484793 C-T Homo INTERGENIC
SBS Chr2 17689893 G-A Hetero INTRON
SBS Chr2 27813289 A-G Hetero INTERGENIC
SBS Chr3 10356495 C-A Hetero INTERGENIC
SBS Chr3 31311715 G-A Hetero INTRON
SBS Chr3 36336296 A-T Hetero SPLICE_SITE_REGION
SBS Chr3 36336297 C-T Hetero SPLICE_SITE_REGION
SBS Chr4 568860 A-T Homo INTERGENIC
SBS Chr4 16826136 C-A Hetero INTERGENIC
SBS Chr4 16984382 G-C Hetero INTERGENIC
SBS Chr4 17287955 G-T Hetero INTERGENIC
SBS Chr4 19720426 C-T Hetero INTERGENIC
SBS Chr4 25266591 T-A Hetero INTERGENIC
SBS Chr4 25776210 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g179300
SBS Chr5 2272484 G-A Hetero INTERGENIC
SBS Chr5 12164525 C-T Hetero INTERGENIC
SBS Chr5 22152664 A-G Homo INTERGENIC
SBS Chr6 14897559 C-G Homo INTERGENIC
SBS Chr6 15314101 C-T Homo INTERGENIC
SBS Chr6 17941992 T-A Homo INTERGENIC
SBS Chr6 17941993 T-G Homo INTERGENIC
SBS Chr7 6838411 A-G Hetero INTERGENIC
SBS Chr7 29622951 A-G Hetero INTERGENIC
SBS Chr8 26666288 G-A Hetero INTERGENIC
SBS Chr9 5954268 T-C Homo NON_SYNONYMOUS_CODING OsKitaake09g034732
SBS Chr9 6484192 C-T Hetero INTERGENIC
SBS Chr9 17120289 T-C Hetero SYNONYMOUS_CODING
SBS Chr9 17120294 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g127400
SBS Chr9 18922514 C-T Hetero INTERGENIC
SBS Chr10 3949883 T-A Hetero INTERGENIC
SBS Chr10 13223672 A-T Hetero INTRON
SBS Chr11 8569151 C-T Hetero INTERGENIC
SBS Chr11 10586634 C-G Hetero INTRON
SBS Chr12 8157837 C-T Hetero INTERGENIC
SBS Chr12 14347309 C-A Hetero INTERGENIC
SBS Chr12 15805576 C-G Hetero INTERGENIC
SBS Chr12 25113106 G-A Hetero UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2405001 2419000 13999
Deletion Chr6 10513338 10513348 10
Deletion Chr11 12459798 12459799 1
Deletion Chr7 12902162 12902173 11
Deletion Chr11 17933603 17933670 67
Deletion Chr4 18091293 18091463 170
Deletion Chr5 19245421 19245607 186
Deletion Chr3 20033081 20033534 453
Deletion Chr6 22902827 22902840 13
Deletion Chr5 29224333 29224335 2
Deletion Chr4 32609001 32655000 45999 5
Deletion Chr3 33888001 33914000 25999 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19262119 19262122 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 32608457 32702078 OsKitaake04g261800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 32702088 Chr3 31681663

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2262539	G-A	Hetero	INTERGENIC
SBS	Chr1	12110932	G-C	Hetero	INTERGENIC
SBS	Chr1	14825672	G-A	Homo	INTERGENIC
SBS	Chr1	23252334	G-A	Homo	INTERGENIC
SBS	Chr1	29484793	C-T	Homo	INTERGENIC
SBS	Chr2	17689893	G-A	Hetero	INTRON
SBS	Chr2	27813289	A-G	Hetero	INTERGENIC
SBS	Chr3	10356495	C-A	Hetero	INTERGENIC
SBS	Chr3	31311715	G-A	Hetero	INTRON
SBS	Chr3	36336296	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr3	36336297	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr4	568860	A-T	Homo	INTERGENIC
SBS	Chr4	16826136	C-A	Hetero	INTERGENIC
SBS	Chr4	16984382	G-C	Hetero	INTERGENIC
SBS	Chr4	17287955	G-T	Hetero	INTERGENIC
SBS	Chr4	19720426	C-T	Hetero	INTERGENIC
SBS	Chr4	25266591	T-A	Hetero	INTERGENIC
SBS	Chr4	25776210	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g179300
SBS	Chr5	2272484	G-A	Hetero	INTERGENIC
SBS	Chr5	12164525	C-T	Hetero	INTERGENIC
SBS	Chr5	22152664	A-G	Homo	INTERGENIC
SBS	Chr6	14897559	C-G	Homo	INTERGENIC
SBS	Chr6	15314101	C-T	Homo	INTERGENIC
SBS	Chr6	17941992	T-A	Homo	INTERGENIC
SBS	Chr6	17941993	T-G	Homo	INTERGENIC
SBS	Chr7	6838411	A-G	Hetero	INTERGENIC
SBS	Chr7	29622951	A-G	Hetero	INTERGENIC
SBS	Chr8	26666288	G-A	Hetero	INTERGENIC
SBS	Chr9	5954268	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g034732
SBS	Chr9	6484192	C-T	Hetero	INTERGENIC
SBS	Chr9	17120289	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17120294	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g127400
SBS	Chr9	18922514	C-T	Hetero	INTERGENIC
SBS	Chr10	3949883	T-A	Hetero	INTERGENIC
SBS	Chr10	13223672	A-T	Hetero	INTRON
SBS	Chr11	8569151	C-T	Hetero	INTERGENIC
SBS	Chr11	10586634	C-G	Hetero	INTRON
SBS	Chr12	8157837	C-T	Hetero	INTERGENIC
SBS	Chr12	14347309	C-A	Hetero	INTERGENIC
SBS	Chr12	15805576	C-G	Hetero	INTERGENIC
SBS	Chr12	25113106	G-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2405001	2419000	13999
Deletion	Chr6	10513338	10513348	10
Deletion	Chr11	12459798	12459799	1
Deletion	Chr7	12902162	12902173	11
Deletion	Chr11	17933603	17933670	67
Deletion	Chr4	18091293	18091463	170
Deletion	Chr5	19245421	19245607	186
Deletion	Chr3	20033081	20033534	453
Deletion	Chr6	22902827	22902840	13
Deletion	Chr5	29224333	29224335	2
Deletion	Chr4	32609001	32655000	45999	5
Deletion	Chr3	33888001	33914000	25999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	32608457	32702078	OsKitaake04g261800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes