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| Mutant Information |
|---|
| Mutant Name | FN-143 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-143 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8265654 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 12262205 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 36023669 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 20606349 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27207694 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3110390 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9131398 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 32637719 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13744591 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17463550 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 18429265 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 26469018 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 30722813 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 10243793 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 17098737 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 25182139 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g227000 |
| SBS | Chr8 | 23282204 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12331069 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18298518 | G-C | Hetero | INTRON | |
| SBS | Chr10 | 1117298 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29634193 | T-G | Homo | INTRON | |
| SBS | Chr12 | 12549980 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24502484 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26087216 | T-G | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 598925 | 599069 | 144 | |
| Deletion | Chr3 | 2665001 | 2721000 | 55999 | 5 |
| Deletion | Chr3 | 2728001 | 2893000 | 164999 | 20 |
| Deletion | Chr2 | 2948130 | 2948131 | 1 | |
| Deletion | Chr11 | 5073001 | 5102000 | 28999 | OsKitaake11g064300 |
| Deletion | Chr10 | 8675813 | 8675979 | 166 | |
| Deletion | Chr6 | 9305090 | 9305101 | 11 | |
| Deletion | Chr2 | 19092332 | 19092336 | 4 | |
| Deletion | Chr6 | 21062578 | 21062579 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 29366843 | 29366848 | 4 | |
| Insertion | Chr9 | 12736075 | 12736078 | 2 | |
| Insertion | Chr10 | 21003337 | 21003341 | 3 | |
| Insertion | Chr1 | 12807083 | 12807086 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 6067439 | 6122770 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 6067446 | Chr7 | 16821875 | OsKitaake07g138000 |
| Translocation | Chr11 | 6067683 | Chr7 | 16821825 | OsKitaake07g138000 |