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Mutant Information

Mutant Name	FN-144 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-144 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24628546 T-A Homo INTERGENIC
SBS Chr1 25337383 G-A Homo INTERGENIC
SBS Chr1 25337384 C-A Homo INTERGENIC
SBS Chr1 35576485 G-A Hetero INTERGENIC
SBS Chr1 36052845 T-C Homo INTERGENIC
SBS Chr2 7317330 A-G Hetero INTERGENIC
SBS Chr2 20031342 T-A Hetero INTRON
SBS Chr3 29861430 A-T Hetero INTERGENIC
SBS Chr4 3515616 G-C Hetero INTERGENIC
SBS Chr4 6838240 C-T Hetero INTERGENIC
SBS Chr4 7754148 A-G Hetero INTERGENIC
SBS Chr4 8446149 C-T Hetero INTERGENIC
SBS Chr4 9230441 T-C Hetero INTERGENIC
SBS Chr4 14839649 A-T Hetero INTRON
SBS Chr4 14839650 C-T Hetero INTRON
SBS Chr4 28523041 T-A Hetero INTRON
SBS Chr6 30682709 T-A Homo INTERGENIC
SBS Chr7 14308846 T-C Hetero INTRON
SBS Chr7 24776791 G-A Hetero INTERGENIC
SBS Chr7 25514551 G-A Hetero INTERGENIC
SBS Chr8 10639411 T-C Hetero INTERGENIC
SBS Chr9 4017730 C-G Homo INTERGENIC
SBS Chr9 8732194 G-T Hetero INTERGENIC
SBS Chr9 14442297 G-A Hetero INTERGENIC
SBS Chr9 16093646 T-C Hetero INTERGENIC
SBS Chr9 17494869 T-A Hetero INTRON
SBS Chr10 20626291 T-A Hetero INTERGENIC
SBS Chr10 21704601 T-C Hetero INTERGENIC
SBS Chr11 17626873 C-A Hetero INTERGENIC
SBS Chr11 18623191 C-T Hetero UTR_3_PRIME
SBS Chr11 24431087 A-G Hetero INTERGENIC
SBS Chr12 6360904 T-C Hetero INTERGENIC
SBS Chr12 24238519 A-T Hetero INTERGENIC
SBS Chr12 26212119 G-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5290328 5290329 1
Deletion Chr7 5424288 5424293 5
Deletion Chr1 5480860 5480879 19
Deletion Chr12 8896880 8896884 4
Deletion Chr6 9510409 9510415 6 OsKitaake06g112300
Deletion Chr6 16281594 16281595 1
Deletion Chr3 18803319 18803328 9
Deletion Chr3 20034154 20034607 453
Deletion Chr6 22063436 22063438 2 OsKitaake06g194200
Deletion Chr8 26299715 26299726 11
Deletion Chr5 26669326 26669330 4
Deletion Chr2 29914151 29914152 1
Deletion Chr1 41508532 41508533 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17806016 17806022 5
Insertion Chr2 31799526 31799529 2
Insertion Chr3 16677582 16677585 2
Insertion Chr4 30055245 30055254 8
Insertion Chr8 15879316 15879319 2
Insertion Chr11 2678059 2678063 3
Insertion Chr2 13851980 13851983 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 8010312 8010570 OsKitaake10g050500
Inversion Chr11 23205695 23224865 OsKitaake11g184450

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 15080150 Chr2 30100011 OsKitaake09g104500
Translocation Chr11 21749934 Chr8 10657698 OsKitaake08g096100
Translocation Chr11 21849480 Chr8 10628100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24628546	T-A	Homo	INTERGENIC
SBS	Chr1	25337383	G-A	Homo	INTERGENIC
SBS	Chr1	25337384	C-A	Homo	INTERGENIC
SBS	Chr1	35576485	G-A	Hetero	INTERGENIC
SBS	Chr1	36052845	T-C	Homo	INTERGENIC
SBS	Chr2	7317330	A-G	Hetero	INTERGENIC
SBS	Chr2	20031342	T-A	Hetero	INTRON
SBS	Chr3	29861430	A-T	Hetero	INTERGENIC
SBS	Chr4	3515616	G-C	Hetero	INTERGENIC
SBS	Chr4	6838240	C-T	Hetero	INTERGENIC
SBS	Chr4	7754148	A-G	Hetero	INTERGENIC
SBS	Chr4	8446149	C-T	Hetero	INTERGENIC
SBS	Chr4	9230441	T-C	Hetero	INTERGENIC
SBS	Chr4	14839649	A-T	Hetero	INTRON
SBS	Chr4	14839650	C-T	Hetero	INTRON
SBS	Chr4	28523041	T-A	Hetero	INTRON
SBS	Chr6	30682709	T-A	Homo	INTERGENIC
SBS	Chr7	14308846	T-C	Hetero	INTRON
SBS	Chr7	24776791	G-A	Hetero	INTERGENIC
SBS	Chr7	25514551	G-A	Hetero	INTERGENIC
SBS	Chr8	10639411	T-C	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Homo	INTERGENIC
SBS	Chr9	8732194	G-T	Hetero	INTERGENIC
SBS	Chr9	14442297	G-A	Hetero	INTERGENIC
SBS	Chr9	16093646	T-C	Hetero	INTERGENIC
SBS	Chr9	17494869	T-A	Hetero	INTRON
SBS	Chr10	20626291	T-A	Hetero	INTERGENIC
SBS	Chr10	21704601	T-C	Hetero	INTERGENIC
SBS	Chr11	17626873	C-A	Hetero	INTERGENIC
SBS	Chr11	18623191	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	24431087	A-G	Hetero	INTERGENIC
SBS	Chr12	6360904	T-C	Hetero	INTERGENIC
SBS	Chr12	24238519	A-T	Hetero	INTERGENIC
SBS	Chr12	26212119	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5290328	5290329	1
Deletion	Chr7	5424288	5424293	5
Deletion	Chr1	5480860	5480879	19
Deletion	Chr12	8896880	8896884	4
Deletion	Chr6	9510409	9510415	6	OsKitaake06g112300
Deletion	Chr6	16281594	16281595	1
Deletion	Chr3	18803319	18803328	9
Deletion	Chr3	20034154	20034607	453
Deletion	Chr6	22063436	22063438	2	OsKitaake06g194200
Deletion	Chr8	26299715	26299726	11
Deletion	Chr5	26669326	26669330	4
Deletion	Chr2	29914151	29914152	1
Deletion	Chr1	41508532	41508533	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	8010312	8010570	OsKitaake10g050500
Inversion	Chr11	23205695	23224865	OsKitaake11g184450

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes