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Mutant Information

Mutant Name	FN-145 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-145 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5742337 G-A Homo INTERGENIC
SBS Chr1 35455705 G-A Homo INTERGENIC
SBS Chr1 35455706 C-T Homo INTERGENIC
SBS Chr1 36428262 G-T Hetero INTERGENIC
SBS Chr2 5800034 T-A Homo UTR_3_PRIME
SBS Chr2 10009447 G-T Hetero INTERGENIC
SBS Chr2 20447884 C-T Homo INTERGENIC
SBS Chr2 21284644 A-C Hetero INTERGENIC
SBS Chr2 29341492 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g295200
SBS Chr2 29815528 A-T Hetero INTERGENIC
SBS Chr3 49517 C-T Hetero INTERGENIC
SBS Chr3 7116007 C-T Hetero INTERGENIC
SBS Chr4 3391120 G-C Hetero INTERGENIC
SBS Chr4 17059201 G-A Hetero INTERGENIC
SBS Chr4 17059202 T-A Hetero INTERGENIC
SBS Chr4 21180403 G-A Hetero INTERGENIC
SBS Chr4 29027738 C-G Hetero INTERGENIC
SBS Chr5 1733512 A-T Hetero INTERGENIC
SBS Chr5 24589343 T-C Hetero INTRON
SBS Chr6 9858427 C-T Homo INTERGENIC
SBS Chr6 21865673 G-A Homo SYNONYMOUS_CODING
SBS Chr6 21865675 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g192500
SBS Chr7 16259203 A-T Hetero INTRON
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr8 1770949 G-T Homo INTERGENIC
SBS Chr8 6337624 G-A Homo INTRON
SBS Chr9 17308567 A-G Hetero INTERGENIC
SBS Chr12 18843432 C-T Hetero INTERGENIC
SBS Chr12 20776202 A-G Hetero INTERGENIC
SBS Chr12 23087303 C-A Hetero INTERGENIC
SBS Chr12 24611338 T-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4742180 4742305 125
Deletion Chr1 7575761 7575822 61
Deletion Chr7 8290576 8290577 1
Deletion Chr7 10268465 10268467 2
Deletion Chr12 11637378 11637382 4
Deletion Chr2 12543034 12543035 1
Deletion Chr12 12944001 13132000 187999 7
Deletion Chr12 13137001 13296000 158999 17
Deletion Chr10 14644999 14645047 48
Deletion Chr12 17130818 17130827 9
Deletion Chr1 18570274 18570279 5 OsKitaake01g186400
Deletion Chr6 21240359 21240370 11
Deletion Chr6 21543472 21543481 9
Deletion Chr1 21842773 21842775 2
Deletion Chr1 24391351 24391359 8
Deletion Chr1 25535087 25535089 2
Deletion Chr4 31692406 31692413 7
Deletion Chr2 34366130 34366131 1
Deletion Chr1 35455690 35455691 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13855581 13855584 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 20766033 21408827
Inversion Chr11 20766036 21408848

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12942458 Chr5 29280686
Translocation Chr12 13294577 Chr5 29106475 OsKitaake05g275400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5742337	G-A	Homo	INTERGENIC
SBS	Chr1	35455705	G-A	Homo	INTERGENIC
SBS	Chr1	35455706	C-T	Homo	INTERGENIC
SBS	Chr1	36428262	G-T	Hetero	INTERGENIC
SBS	Chr2	5800034	T-A	Homo	UTR_3_PRIME
SBS	Chr2	10009447	G-T	Hetero	INTERGENIC
SBS	Chr2	20447884	C-T	Homo	INTERGENIC
SBS	Chr2	21284644	A-C	Hetero	INTERGENIC
SBS	Chr2	29341492	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g295200
SBS	Chr2	29815528	A-T	Hetero	INTERGENIC
SBS	Chr3	49517	C-T	Hetero	INTERGENIC
SBS	Chr3	7116007	C-T	Hetero	INTERGENIC
SBS	Chr4	3391120	G-C	Hetero	INTERGENIC
SBS	Chr4	17059201	G-A	Hetero	INTERGENIC
SBS	Chr4	17059202	T-A	Hetero	INTERGENIC
SBS	Chr4	21180403	G-A	Hetero	INTERGENIC
SBS	Chr4	29027738	C-G	Hetero	INTERGENIC
SBS	Chr5	1733512	A-T	Hetero	INTERGENIC
SBS	Chr5	24589343	T-C	Hetero	INTRON
SBS	Chr6	9858427	C-T	Homo	INTERGENIC
SBS	Chr6	21865673	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	21865675	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g192500
SBS	Chr7	16259203	A-T	Hetero	INTRON
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr8	1770949	G-T	Homo	INTERGENIC
SBS	Chr8	6337624	G-A	Homo	INTRON
SBS	Chr9	17308567	A-G	Hetero	INTERGENIC
SBS	Chr12	18843432	C-T	Hetero	INTERGENIC
SBS	Chr12	20776202	A-G	Hetero	INTERGENIC
SBS	Chr12	23087303	C-A	Hetero	INTERGENIC
SBS	Chr12	24611338	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4742180	4742305	125
Deletion	Chr1	7575761	7575822	61
Deletion	Chr7	8290576	8290577	1
Deletion	Chr7	10268465	10268467	2
Deletion	Chr12	11637378	11637382	4
Deletion	Chr2	12543034	12543035	1
Deletion	Chr12	12944001	13132000	187999	7
Deletion	Chr12	13137001	13296000	158999	17
Deletion	Chr10	14644999	14645047	48
Deletion	Chr12	17130818	17130827	9
Deletion	Chr1	18570274	18570279	5	OsKitaake01g186400
Deletion	Chr6	21240359	21240370	11
Deletion	Chr6	21543472	21543481	9
Deletion	Chr1	21842773	21842775	2
Deletion	Chr1	24391351	24391359	8
Deletion	Chr1	25535087	25535089	2
Deletion	Chr4	31692406	31692413	7
Deletion	Chr2	34366130	34366131	1
Deletion	Chr1	35455690	35455691	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20766033	21408827
Inversion	Chr11	20766036	21408848

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes