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Mutant Information

Mutant Name	FN-146 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-146 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8947141 T-A Hetero INTERGENIC
SBS Chr1 19474425 A-T Homo INTERGENIC
SBS Chr1 28033281 A-T Homo INTRON
SBS Chr2 18231641 T-A Homo INTERGENIC
SBS Chr2 24728684 A-T Hetero INTERGENIC
SBS Chr3 10148358 C-A Hetero INTERGENIC
SBS Chr3 10852491 T-C Hetero INTERGENIC
SBS Chr3 20294009 C-T Homo INTERGENIC
SBS Chr4 12241800 A-T Homo INTERGENIC
SBS Chr4 14267665 T-C Hetero INTERGENIC
SBS Chr4 36336689 T-A Hetero INTRON
SBS Chr5 5111815 C-T Hetero INTERGENIC
SBS Chr5 25253152 C-G Hetero INTERGENIC
SBS Chr6 4069365 A-T Hetero INTERGENIC
SBS Chr6 28327178 C-T Hetero INTERGENIC
SBS Chr7 14835432 C-T Hetero INTERGENIC
SBS Chr7 17519303 T-C Hetero INTERGENIC
SBS Chr8 615119 T-A Hetero INTERGENIC
SBS Chr9 11945641 A-C Hetero INTRON
SBS Chr9 19035904 A-T Hetero INTRON
SBS Chr10 14048239 C-T Hetero INTERGENIC
SBS Chr10 23733870 G-T Homo INTERGENIC
SBS Chr11 20221111 A-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1716001 1847000 130999 16
Deletion Chr11 5087993 5087994 1
Deletion Chr5 8349679 8349684 5
Deletion Chr4 12236352 12236354 2
Deletion Chr8 12618944 12618945 1
Deletion Chr6 17857683 17857687 4
Deletion Chr2 22353001 22367000 13999 3
Deletion Chr1 28033269 28033270 1
Deletion Chr3 30708922 30708924 2
Deletion Chr3 32343151 32343157 6
Deletion Chr3 36766605 36766607 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 8267973 8267982 8

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2011691 2312661 OsKitaake01g028600
Inversion Chr11 5090382 5349302
Inversion Chr11 5090399 5349308
Inversion Chr12 5144410 5744565 OsKitaake12g065100
Inversion Chr12 5416500 5744573
Inversion Chr2 22001398 22352157

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 384999 Chr1 21156176 OsKitaake08g005800
Translocation Chr8 385037 Chr1 21155484 OsKitaake08g005800
Translocation Chr12 5144427 Chr7 23698759 2
Translocation Chr12 24286311 Chr2 22425967 OsKitaake02g217100
Translocation Chr12 24286318 Chr2 22366918

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8947141	T-A	Hetero	INTERGENIC
SBS	Chr1	19474425	A-T	Homo	INTERGENIC
SBS	Chr1	28033281	A-T	Homo	INTRON
SBS	Chr2	18231641	T-A	Homo	INTERGENIC
SBS	Chr2	24728684	A-T	Hetero	INTERGENIC
SBS	Chr3	10148358	C-A	Hetero	INTERGENIC
SBS	Chr3	10852491	T-C	Hetero	INTERGENIC
SBS	Chr3	20294009	C-T	Homo	INTERGENIC
SBS	Chr4	12241800	A-T	Homo	INTERGENIC
SBS	Chr4	14267665	T-C	Hetero	INTERGENIC
SBS	Chr4	36336689	T-A	Hetero	INTRON
SBS	Chr5	5111815	C-T	Hetero	INTERGENIC
SBS	Chr5	25253152	C-G	Hetero	INTERGENIC
SBS	Chr6	4069365	A-T	Hetero	INTERGENIC
SBS	Chr6	28327178	C-T	Hetero	INTERGENIC
SBS	Chr7	14835432	C-T	Hetero	INTERGENIC
SBS	Chr7	17519303	T-C	Hetero	INTERGENIC
SBS	Chr8	615119	T-A	Hetero	INTERGENIC
SBS	Chr9	11945641	A-C	Hetero	INTRON
SBS	Chr9	19035904	A-T	Hetero	INTRON
SBS	Chr10	14048239	C-T	Hetero	INTERGENIC
SBS	Chr10	23733870	G-T	Homo	INTERGENIC
SBS	Chr11	20221111	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1716001	1847000	130999	16
Deletion	Chr11	5087993	5087994	1
Deletion	Chr5	8349679	8349684	5
Deletion	Chr4	12236352	12236354	2
Deletion	Chr8	12618944	12618945	1
Deletion	Chr6	17857683	17857687	4
Deletion	Chr2	22353001	22367000	13999	3
Deletion	Chr1	28033269	28033270	1
Deletion	Chr3	30708922	30708924	2
Deletion	Chr3	32343151	32343157	6
Deletion	Chr3	36766605	36766607	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2011691	2312661	OsKitaake01g028600
Inversion	Chr11	5090382	5349302
Inversion	Chr11	5090399	5349308
Inversion	Chr12	5144410	5744565	OsKitaake12g065100
Inversion	Chr12	5416500	5744573
Inversion	Chr2	22001398	22352157

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes