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| Mutant Information |
|---|
| Mutant Name | FN-147 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-147 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1169822 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 7805346 | G-C | Homo | INTRON | |
| SBS | Chr1 | 21980311 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 22398493 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21824849 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 28750131 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g289332 |
| SBS | Chr4 | 611920 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14010424 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 18062618 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 23062876 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 25471293 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 26828393 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12226711 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g106200 |
| SBS | Chr8 | 27457724 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27914753 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28580376 | G-C | Homo | INTRON | |
| SBS | Chr8 | 29195125 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 899958 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6683272 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15912152 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 22260013 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 9723259 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 13176427 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18352145 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 13363506 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g111100 |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 6785620 | 6785622 | 2 | OsKitaake05g068400 |
| Deletion | Chr5 | 7198533 | 7198553 | 20 | |
| Deletion | Chr1 | 7374685 | 7374693 | 8 | |
| Deletion | Chr11 | 13179001 | 13189000 | 9999 | |
| Deletion | Chr12 | 13809153 | 13809154 | 1 | |
| Deletion | Chr11 | 21537001 | 21661000 | 123999 | 16 |
| Deletion | Chr4 | 23115115 | 23115116 | 1 | OsKitaake04g140900 |
| Deletion | Chr10 | 23825182 | 23825185 | 3 | |
| Deletion | Chr1 | 27858103 | 27858106 | 3 | OsKitaake01g270500 |
| Deletion | Chr1 | 35814001 | 35840000 | 25999 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 18818033 | 18818037 | 3 | |
| Insertion | Chr12 | 23958505 | 23958508 | 2 | |
| Insertion | Chr12 | 24074700 | 24074703 | 2 | |
| Insertion | Chr5 | 1847473 | 1847477 | 3 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 25984908 | 26565565 |