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Mutant Information

Mutant Name	FN-148 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-148 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16089296 G-A Hetero INTERGENIC
SBS Chr1 19212412 C-A Hetero INTERGENIC
SBS Chr1 20216201 A-G Hetero INTRON
SBS Chr1 32705508 T-C Homo INTERGENIC
SBS Chr1 37768587 T-C Homo INTERGENIC
SBS Chr2 14292404 C-T Hetero INTERGENIC
SBS Chr2 22850482 A-G Hetero INTRON
SBS Chr2 31230975 C-T Hetero INTERGENIC
SBS Chr3 6025362 G-T Homo INTERGENIC
SBS Chr3 24043675 C-T Homo INTERGENIC
SBS Chr4 3783282 C-T Hetero INTERGENIC
SBS Chr4 7333702 G-A Homo INTERGENIC
SBS Chr4 12024842 A-G Hetero INTERGENIC
SBS Chr4 13759404 C-T Homo INTERGENIC
SBS Chr5 207714 A-G Hetero SPLICE_SITE_REGION
SBS Chr5 207716 C-T Hetero SPLICE_SITE_DONOR OsKitaake05g002600
SBS Chr5 10095402 C-T Homo INTERGENIC
SBS Chr5 23585913 T-G Hetero INTERGENIC
SBS Chr6 8086894 G-A Homo INTERGENIC
SBS Chr7 9292886 T-C Homo INTERGENIC
SBS Chr8 5953790 A-C Homo INTRON
SBS Chr10 12312301 T-C Hetero INTERGENIC
SBS Chr11 2294297 A-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3289928 3289929 1
Deletion Chr8 4167996 4168003 7
Deletion Chr4 4591298 4591306 8
Deletion Chr8 5409224 5409227 3 OsKitaake08g058800
Deletion Chr6 5513939 5513941 2
Deletion Chr7 7538170 7538183 13
Deletion Chr5 7964001 8005000 40999 4
Deletion Chr2 11663097 11663109 12
Deletion Chr3 17505941 17505944 3
Deletion Chr1 18124142 18124155 13
Deletion Chr5 21877779 21877780 1
Deletion Chr7 23600771 23600772 1
Deletion Chr2 28158775 28158780 5
Deletion Chr1 33282375 33282376 1
Deletion Chr2 33979754 33979761 7

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 17131034 18070195

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16089296	G-A	Hetero	INTERGENIC
SBS	Chr1	19212412	C-A	Hetero	INTERGENIC
SBS	Chr1	20216201	A-G	Hetero	INTRON
SBS	Chr1	32705508	T-C	Homo	INTERGENIC
SBS	Chr1	37768587	T-C	Homo	INTERGENIC
SBS	Chr2	14292404	C-T	Hetero	INTERGENIC
SBS	Chr2	22850482	A-G	Hetero	INTRON
SBS	Chr2	31230975	C-T	Hetero	INTERGENIC
SBS	Chr3	6025362	G-T	Homo	INTERGENIC
SBS	Chr3	24043675	C-T	Homo	INTERGENIC
SBS	Chr4	3783282	C-T	Hetero	INTERGENIC
SBS	Chr4	7333702	G-A	Homo	INTERGENIC
SBS	Chr4	12024842	A-G	Hetero	INTERGENIC
SBS	Chr4	13759404	C-T	Homo	INTERGENIC
SBS	Chr5	207714	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr5	207716	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake05g002600
SBS	Chr5	10095402	C-T	Homo	INTERGENIC
SBS	Chr5	23585913	T-G	Hetero	INTERGENIC
SBS	Chr6	8086894	G-A	Homo	INTERGENIC
SBS	Chr7	9292886	T-C	Homo	INTERGENIC
SBS	Chr8	5953790	A-C	Homo	INTRON
SBS	Chr10	12312301	T-C	Hetero	INTERGENIC
SBS	Chr11	2294297	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3289928	3289929	1
Deletion	Chr8	4167996	4168003	7
Deletion	Chr4	4591298	4591306	8
Deletion	Chr8	5409224	5409227	3	OsKitaake08g058800
Deletion	Chr6	5513939	5513941	2
Deletion	Chr7	7538170	7538183	13
Deletion	Chr5	7964001	8005000	40999	4
Deletion	Chr2	11663097	11663109	12
Deletion	Chr3	17505941	17505944	3
Deletion	Chr1	18124142	18124155	13
Deletion	Chr5	21877779	21877780	1
Deletion	Chr7	23600771	23600772	1
Deletion	Chr2	28158775	28158780	5
Deletion	Chr1	33282375	33282376	1
Deletion	Chr2	33979754	33979761	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	17131034	18070195

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes