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| Mutant Information |
|---|
| Mutant Name | FN-149 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-149 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2167153 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 3976801 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 5777875 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 7848456 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 27399789 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 30544460 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 15900647 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20310436 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26389052 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 16435161 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 20681570 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 28640579 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g214400 |
| SBS | Chr5 | 9035651 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16657474 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12809239 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17028550 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4192926 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11823850 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5257743 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18663327 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22876823 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5175513 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14730466 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 15746541 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 8062044 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 8062045 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 9710197 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 15560544 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 20340088 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4772358 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 27133001 | A-T | Homo | INTRON |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 17544 | 17546 | 2 | |
| Deletion | Chr4 | 3274516 | 3274522 | 6 | |
| Deletion | Chr9 | 4423001 | 4444000 | 20999 | 2 |
| Deletion | Chr7 | 6539216 | 6539225 | 9 | OsKitaake07g075450 |
| Deletion | Chr9 | 7417914 | 7417916 | 2 | OsKitaake09g042401 |
| Deletion | Chr9 | 16417306 | 16417313 | 7 | |
| Deletion | Chr4 | 18519566 | 18519571 | 5 | |
| Deletion | Chr5 | 21673368 | 21673369 | 1 | |
| Deletion | Chr2 | 22036486 | 22036488 | 2 | OsKitaake02g214550 |
| Deletion | Chr5 | 25790793 | 25790794 | 1 | |
| Deletion | Chr11 | 26218001 | 26457000 | 238999 | 38 |
| Deletion | Chr4 | 30345185 | 30345191 | 6 | |
| Deletion | Chr4 | 33879685 | 33879704 | 19 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 8976235 | 8976239 | 3 | |
| Insertion | Chr2 | 10324700 | 10324702 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 3080633 | 3662151 | |
| Inversion | Chr9 | 4234430 | 4422903 | |
| Inversion | Chr9 | 4234453 | 4445615 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 3626911 | Chr3 | 1646745 | OsKitaake03g023200 |
| Translocation | Chr4 | 5749254 | Chr2 | 31520423 | |
| Translocation | Chr5 | 11185623 | Chr4 | 5624195 | |
| Translocation | Chr5 | 11186143 | Chr2 | 31516741 |