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Mutant Information

Mutant Name	FN-15 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-15 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 438216 C-A Hetero INTRON
SBS Chr1 438217 C-A Hetero INTRON
SBS Chr1 6666627 C-T Hetero INTERGENIC
SBS Chr1 13722384 T-A Homo INTERGENIC
SBS Chr1 20939959 T-C Homo INTERGENIC
SBS Chr1 42009270 C-G Hetero INTERGENIC
SBS Chr2 11470000 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g132800
SBS Chr2 18727365 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g184300
SBS Chr2 22365308 G-C Hetero INTERGENIC
SBS Chr3 5197390 G-A Hetero INTERGENIC
SBS Chr3 8485525 G-T Hetero INTERGENIC
SBS Chr3 15696531 G-A Hetero INTERGENIC
SBS Chr3 16146912 C-A Hetero STOP_GAINED OsKitaake03g206000
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 20902085 G-C Hetero INTRON
SBS Chr3 21897149 C-T Hetero INTERGENIC
SBS Chr3 36600512 G-T Hetero INTRON
SBS Chr4 1862917 A-T Homo INTRON
SBS Chr4 7251806 G-A Hetero INTERGENIC
SBS Chr4 28759952 C-A Hetero INTERGENIC
SBS Chr5 7211897 C-T Hetero INTRON
SBS Chr5 12807227 C-T Homo INTERGENIC
SBS Chr5 13702268 T-C Hetero INTERGENIC
SBS Chr5 24354569 T-C Homo UTR_3_PRIME
SBS Chr6 13680086 G-A Hetero INTERGENIC
SBS Chr6 16143549 G-A Hetero UTR_3_PRIME
SBS Chr6 22954617 C-T Hetero INTERGENIC
SBS Chr7 9994076 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g098800
SBS Chr7 21334146 T-G Hetero INTRON
SBS Chr8 1025145 C-T Hetero INTERGENIC
SBS Chr8 2375419 A-T Hetero INTERGENIC
SBS Chr8 18695849 G-C Hetero INTERGENIC
SBS Chr8 18769030 A-T Hetero INTERGENIC
SBS Chr9 11996954 G-C Hetero INTERGENIC
SBS Chr9 15901619 C-G Homo INTERGENIC
SBS Chr9 15952504 C-T Homo INTERGENIC
SBS Chr9 19601041 C-T Hetero INTERGENIC
SBS Chr10 11074261 A-T Homo INTERGENIC
SBS Chr10 12126380 T-A Homo INTERGENIC
SBS Chr10 19877015 A-G Hetero INTERGENIC
SBS Chr11 6645585 A-G Hetero INTERGENIC
SBS Chr11 20224221 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2989001 3323000 333999 35
Deletion Chr10 3084119 3084413 294
Deletion Chr12 7589724 7589726 2
Deletion Chr10 10884709 10884710 1
Deletion Chr6 18252339 18252340 1
Deletion Chr5 21088472 21088488 16
Deletion Chr9 22332936 22332946 10 OsKitaake09g202400
Deletion Chr3 22461585 22461756 171
Deletion Chr1 22659341 22659343 2
Deletion Chr2 31763229 31763231 2
Deletion Chr3 32252001 32278000 25999 5
Deletion Chr3 32281001 32395000 113999 6

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 33286034 33484730 OsKitaake02g345700
Inversion Chr2 33286035 33484739 OsKitaake02g345700
Inversion Chr3 35442648 35849217 OsKitaake03g394800
Inversion Chr3 35442651 35849201 OsKitaake03g394800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	438216	C-A	Hetero	INTRON
SBS	Chr1	438217	C-A	Hetero	INTRON
SBS	Chr1	6666627	C-T	Hetero	INTERGENIC
SBS	Chr1	13722384	T-A	Homo	INTERGENIC
SBS	Chr1	20939959	T-C	Homo	INTERGENIC
SBS	Chr1	42009270	C-G	Hetero	INTERGENIC
SBS	Chr2	11470000	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g132800
SBS	Chr2	18727365	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g184300
SBS	Chr2	22365308	G-C	Hetero	INTERGENIC
SBS	Chr3	5197390	G-A	Hetero	INTERGENIC
SBS	Chr3	8485525	G-T	Hetero	INTERGENIC
SBS	Chr3	15696531	G-A	Hetero	INTERGENIC
SBS	Chr3	16146912	C-A	Hetero	STOP_GAINED	OsKitaake03g206000
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	20902085	G-C	Hetero	INTRON
SBS	Chr3	21897149	C-T	Hetero	INTERGENIC
SBS	Chr3	36600512	G-T	Hetero	INTRON
SBS	Chr4	1862917	A-T	Homo	INTRON
SBS	Chr4	7251806	G-A	Hetero	INTERGENIC
SBS	Chr4	28759952	C-A	Hetero	INTERGENIC
SBS	Chr5	7211897	C-T	Hetero	INTRON
SBS	Chr5	12807227	C-T	Homo	INTERGENIC
SBS	Chr5	13702268	T-C	Hetero	INTERGENIC
SBS	Chr5	24354569	T-C	Homo	UTR_3_PRIME
SBS	Chr6	13680086	G-A	Hetero	INTERGENIC
SBS	Chr6	16143549	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	22954617	C-T	Hetero	INTERGENIC
SBS	Chr7	9994076	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g098800
SBS	Chr7	21334146	T-G	Hetero	INTRON
SBS	Chr8	1025145	C-T	Hetero	INTERGENIC
SBS	Chr8	2375419	A-T	Hetero	INTERGENIC
SBS	Chr8	18695849	G-C	Hetero	INTERGENIC
SBS	Chr8	18769030	A-T	Hetero	INTERGENIC
SBS	Chr9	11996954	G-C	Hetero	INTERGENIC
SBS	Chr9	15901619	C-G	Homo	INTERGENIC
SBS	Chr9	15952504	C-T	Homo	INTERGENIC
SBS	Chr9	19601041	C-T	Hetero	INTERGENIC
SBS	Chr10	11074261	A-T	Homo	INTERGENIC
SBS	Chr10	12126380	T-A	Homo	INTERGENIC
SBS	Chr10	19877015	A-G	Hetero	INTERGENIC
SBS	Chr11	6645585	A-G	Hetero	INTERGENIC
SBS	Chr11	20224221	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2989001	3323000	333999	35
Deletion	Chr10	3084119	3084413	294
Deletion	Chr12	7589724	7589726	2
Deletion	Chr10	10884709	10884710	1
Deletion	Chr6	18252339	18252340	1
Deletion	Chr5	21088472	21088488	16
Deletion	Chr9	22332936	22332946	10	OsKitaake09g202400
Deletion	Chr3	22461585	22461756	171
Deletion	Chr1	22659341	22659343	2
Deletion	Chr2	31763229	31763231	2
Deletion	Chr3	32252001	32278000	25999	5
Deletion	Chr3	32281001	32395000	113999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	33286034	33484730	OsKitaake02g345700
Inversion	Chr2	33286035	33484739	OsKitaake02g345700
Inversion	Chr3	35442648	35849217	OsKitaake03g394800
Inversion	Chr3	35442651	35849201	OsKitaake03g394800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes