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| Mutant Information |
|---|
| Mutant Name | FN-150 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-150 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17831688 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 35476880 | C-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr2 | 2892405 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3593639 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 927089 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 927090 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19639926 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 2642638 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20331321 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 23861630 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g210600 |
| SBS | Chr6 | 28509107 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 4659938 | T-A | Homo | INTRON | |
| SBS | Chr9 | 11909835 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18766386 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 21807411 | G-A | Homo | INTRON | |
| SBS | Chr11 | 9332337 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26321926 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 27391991 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9950662 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 10515019 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18389401 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21306837 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g167201 |
| SBS | Chr12 | 21306838 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g167201 |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 756993 | 756995 | 2 | |
| Deletion | Chr8 | 4549262 | 4549268 | 6 | |
| Deletion | Chr7 | 5693328 | 5693332 | 4 | |
| Deletion | Chr10 | 8832618 | 8832626 | 8 | |
| Deletion | Chr8 | 8931606 | 8931871 | 265 | |
| Deletion | Chr10 | 10849125 | 10849133 | 8 | |
| Deletion | Chr11 | 10924673 | 10924674 | 1 | |
| Deletion | Chr5 | 14065808 | 14065817 | 9 | |
| Deletion | Chr6 | 14221644 | 14221645 | 1 | |
| Deletion | Chr12 | 14229925 | 14229942 | 17 | |
| Deletion | Chr3 | 17358936 | 17359015 | 79 | |
| Deletion | Chr7 | 19676166 | 19676167 | 1 | |
| Deletion | Chr6 | 19908414 | 19908506 | 92 | |
| Deletion | Chr4 | 21653517 | 21653522 | 5 | |
| Deletion | Chr4 | 22072434 | 22072436 | 2 | |
| Deletion | Chr7 | 26897949 | 26897957 | 8 | |
| Deletion | Chr3 | 28439059 | 28439061 | 2 | OsKitaake03g294400 |
| Deletion | Chr2 | 29043676 | 29043679 | 3 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 650878 | 650882 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 11692712 | 11696482 | |
| Inversion | Chr9 | 11695543 | 11696496 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 6982242 | Chr6 | 7117813 | |
| Translocation | Chr10 | 6982815 | Chr6 | 7117822 | |
| Translocation | Chr11 | 25600625 | Chr7 | 19106342 | |
| Translocation | Chr11 | 25600894 | Chr7 | 19106341 |