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Mutant Information

Mutant Name	FN-152 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-152 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14447431 C-A Hetero INTERGENIC
SBS Chr1 15573385 T-A Homo INTERGENIC
SBS Chr1 19568846 G-A Homo INTERGENIC
SBS Chr1 23891270 G-A Homo INTERGENIC
SBS Chr2 1908912 A-C Hetero SYNONYMOUS_CODING
SBS Chr2 25465157 A-G Hetero INTERGENIC
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr3 2261035 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g032600
SBS Chr3 16452863 T-G Homo INTERGENIC
SBS Chr3 31528828 G-A Hetero INTERGENIC
SBS Chr5 7100001 T-G Hetero INTERGENIC
SBS Chr5 7497512 C-T Hetero INTRON
SBS Chr6 18607470 G-A Hetero INTERGENIC
SBS Chr7 10595549 C-T Hetero INTERGENIC
SBS Chr8 2360597 C-T Hetero INTERGENIC
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr9 2689471 T-C Hetero UTR_3_PRIME
SBS Chr9 5728378 G-A Hetero INTERGENIC
SBS Chr10 1914357 G-A Hetero INTERGENIC
SBS Chr10 4971719 G-T Hetero INTERGENIC
SBS Chr10 20467117 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g156700
SBS Chr11 17923908 G-A Homo INTERGENIC
SBS Chr11 21095161 T-G Hetero INTERGENIC
SBS Chr11 27571465 C-T Hetero INTERGENIC
SBS Chr12 6115135 C-G Homo INTERGENIC
SBS Chr12 9454127 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1094751 1094752 1
Deletion Chr1 1364134 1364135 1 OsKitaake01g016000
Deletion Chr11 2375977 2375979 2
Deletion Chr1 3755244 3755246 2
Deletion Chr6 4150236 4150246 10
Deletion Chr11 6256767 6257237 470
Deletion Chr5 7495785 7495788 3
Deletion Chr7 8464411 8464484 73
Deletion Chr8 8542389 8542390 1
Deletion Chr11 10881349 10881351 2 OsKitaake11g105800
Deletion Chr11 13127001 13200000 72999 OsKitaake11g114600
Deletion Chr3 15130478 15130487 9 OsKitaake03g196200
Deletion Chr9 16141056 16141058 2
Deletion Chr9 17101946 17101950 4
Deletion Chr8 19334755 19334758 3
Deletion Chr4 19934701 19934705 4
Deletion Chr1 23113094 23113096 2
Deletion Chr11 24342192 24342230 38
Deletion Chr4 31124719 31124730 11
Deletion Chr1 33578543 33578544 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 22320090 22320093 2
Insertion Chr5 27183422 27183424 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14447431	C-A	Hetero	INTERGENIC
SBS	Chr1	15573385	T-A	Homo	INTERGENIC
SBS	Chr1	19568846	G-A	Homo	INTERGENIC
SBS	Chr1	23891270	G-A	Homo	INTERGENIC
SBS	Chr2	1908912	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	25465157	A-G	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr3	2261035	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g032600
SBS	Chr3	16452863	T-G	Homo	INTERGENIC
SBS	Chr3	31528828	G-A	Hetero	INTERGENIC
SBS	Chr5	7100001	T-G	Hetero	INTERGENIC
SBS	Chr5	7497512	C-T	Hetero	INTRON
SBS	Chr6	18607470	G-A	Hetero	INTERGENIC
SBS	Chr7	10595549	C-T	Hetero	INTERGENIC
SBS	Chr8	2360597	C-T	Hetero	INTERGENIC
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr9	2689471	T-C	Hetero	UTR_3_PRIME
SBS	Chr9	5728378	G-A	Hetero	INTERGENIC
SBS	Chr10	1914357	G-A	Hetero	INTERGENIC
SBS	Chr10	4971719	G-T	Hetero	INTERGENIC
SBS	Chr10	20467117	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g156700
SBS	Chr11	17923908	G-A	Homo	INTERGENIC
SBS	Chr11	21095161	T-G	Hetero	INTERGENIC
SBS	Chr11	27571465	C-T	Hetero	INTERGENIC
SBS	Chr12	6115135	C-G	Homo	INTERGENIC
SBS	Chr12	9454127	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1094751	1094752	1
Deletion	Chr1	1364134	1364135	1	OsKitaake01g016000
Deletion	Chr11	2375977	2375979	2
Deletion	Chr1	3755244	3755246	2
Deletion	Chr6	4150236	4150246	10
Deletion	Chr11	6256767	6257237	470
Deletion	Chr5	7495785	7495788	3
Deletion	Chr7	8464411	8464484	73
Deletion	Chr8	8542389	8542390	1
Deletion	Chr11	10881349	10881351	2	OsKitaake11g105800
Deletion	Chr11	13127001	13200000	72999	OsKitaake11g114600
Deletion	Chr3	15130478	15130487	9	OsKitaake03g196200
Deletion	Chr9	16141056	16141058	2
Deletion	Chr9	17101946	17101950	4
Deletion	Chr8	19334755	19334758	3
Deletion	Chr4	19934701	19934705	4
Deletion	Chr1	23113094	23113096	2
Deletion	Chr11	24342192	24342230	38
Deletion	Chr4	31124719	31124730	11
Deletion	Chr1	33578543	33578544	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes