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Mutant Information

Mutant Name	FN-153 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-153 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6990133 G-A Homo INTERGENIC
SBS Chr1 6990134 G-A Homo INTERGENIC
SBS Chr1 15842935 C-G Homo INTERGENIC
SBS Chr1 22085569 C-A Hetero INTRON
SBS Chr1 42866088 G-A Hetero UTR_3_PRIME
SBS Chr2 5711907 A-T Hetero INTERGENIC
SBS Chr3 19649133 C-T Hetero INTERGENIC
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr4 1606536 G-A Homo INTERGENIC
SBS Chr4 10715295 A-G Homo INTERGENIC
SBS Chr4 35192044 T-C Hetero INTERGENIC
SBS Chr5 6849696 T-A Hetero INTERGENIC
SBS Chr5 29983190 G-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 23544113 G-A Hetero INTERGENIC
SBS Chr6 23684390 C-G Homo INTERGENIC
SBS Chr6 25305991 A-T Homo INTERGENIC
SBS Chr7 285925 C-T Hetero INTRON
SBS Chr7 907091 C-T Homo INTERGENIC
SBS Chr7 7097432 T-C Homo INTERGENIC
SBS Chr7 18293291 C-T Homo INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 23936191 G-A Homo INTERGENIC
SBS Chr8 15534145 T-C Homo INTRON
SBS Chr8 15542268 G-A Homo INTERGENIC
SBS Chr8 17770798 C-T Hetero INTERGENIC
SBS Chr8 22152875 G-C Hetero INTERGENIC
SBS Chr9 14520091 T-G Hetero INTERGENIC
SBS Chr11 1847167 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 7138016 A-G Hetero INTERGENIC
SBS Chr11 11516390 A-C Hetero INTERGENIC
SBS Chr11 16140018 G-A Hetero INTERGENIC
SBS Chr11 27723113 C-T Hetero INTRON
SBS Chr12 7648656 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 411001 423000 11999 OsKitaake08g006400
Deletion Chr5 6209503 6209504 1
Deletion Chr1 12234349 12234351 2
Deletion Chr1 18783666 18783668 2
Deletion Chr6 21374833 21374835 2
Deletion Chr7 27449895 27449898 3
Deletion Chr1 33363001 33544000 180999 27
Deletion Chr2 35332312 35332322 10
Deletion Chr3 35619209 35619211 2
Deletion Chr1 42866405 42866407 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 20043406 20043419 12
Insertion Chr4 11077459 11077461 1
Insertion Chr5 12402355 12402357 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 423630 645377
Inversion Chr4 10763507 11239900
Inversion Chr10 13130811 13150180
Inversion Chr5 14341753 14636393
Inversion Chr5 14341791 14636408
Inversion Chr7 26422995 26774995 OsKitaake07g249600
Inversion Chr7 26775001 27442273 OsKitaake07g249600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 2509870 Chr2 3445760 OsKitaake02g050200
Translocation Chr11 25741762 Chr9 3231119

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6990133	G-A	Homo	INTERGENIC
SBS	Chr1	6990134	G-A	Homo	INTERGENIC
SBS	Chr1	15842935	C-G	Homo	INTERGENIC
SBS	Chr1	22085569	C-A	Hetero	INTRON
SBS	Chr1	42866088	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	5711907	A-T	Hetero	INTERGENIC
SBS	Chr3	19649133	C-T	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr4	1606536	G-A	Homo	INTERGENIC
SBS	Chr4	10715295	A-G	Homo	INTERGENIC
SBS	Chr4	35192044	T-C	Hetero	INTERGENIC
SBS	Chr5	6849696	T-A	Hetero	INTERGENIC
SBS	Chr5	29983190	G-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	23544113	G-A	Hetero	INTERGENIC
SBS	Chr6	23684390	C-G	Homo	INTERGENIC
SBS	Chr6	25305991	A-T	Homo	INTERGENIC
SBS	Chr7	285925	C-T	Hetero	INTRON
SBS	Chr7	907091	C-T	Homo	INTERGENIC
SBS	Chr7	7097432	T-C	Homo	INTERGENIC
SBS	Chr7	18293291	C-T	Homo	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	23936191	G-A	Homo	INTERGENIC
SBS	Chr8	15534145	T-C	Homo	INTRON
SBS	Chr8	15542268	G-A	Homo	INTERGENIC
SBS	Chr8	17770798	C-T	Hetero	INTERGENIC
SBS	Chr8	22152875	G-C	Hetero	INTERGENIC
SBS	Chr9	14520091	T-G	Hetero	INTERGENIC
SBS	Chr11	1847167	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	7138016	A-G	Hetero	INTERGENIC
SBS	Chr11	11516390	A-C	Hetero	INTERGENIC
SBS	Chr11	16140018	G-A	Hetero	INTERGENIC
SBS	Chr11	27723113	C-T	Hetero	INTRON
SBS	Chr12	7648656	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	411001	423000	11999	OsKitaake08g006400
Deletion	Chr5	6209503	6209504	1
Deletion	Chr1	12234349	12234351	2
Deletion	Chr1	18783666	18783668	2
Deletion	Chr6	21374833	21374835	2
Deletion	Chr7	27449895	27449898	3
Deletion	Chr1	33363001	33544000	180999	27
Deletion	Chr2	35332312	35332322	10
Deletion	Chr3	35619209	35619211	2
Deletion	Chr1	42866405	42866407	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	423630	645377
Inversion	Chr4	10763507	11239900
Inversion	Chr10	13130811	13150180
Inversion	Chr5	14341753	14636393
Inversion	Chr5	14341791	14636408
Inversion	Chr7	26422995	26774995	OsKitaake07g249600
Inversion	Chr7	26775001	27442273	OsKitaake07g249600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes