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Mutant Information

Mutant Name	FN-154 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-154 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17604370 T-G Hetero INTERGENIC
SBS Chr2 16445369 C-T Homo SYNONYMOUS_CODING
SBS Chr3 2192115 T-G Hetero UTR_3_PRIME
SBS Chr3 22996352 T-C Homo INTERGENIC
SBS Chr4 8773808 G-A Hetero INTERGENIC
SBS Chr4 10564984 C-T Hetero INTERGENIC
SBS Chr5 2422636 T-C Homo INTRON
SBS Chr5 11930426 T-C Homo INTERGENIC
SBS Chr6 768273 G-A Homo INTRON
SBS Chr6 8116029 C-T Hetero UTR_5_PRIME
SBS Chr6 13762235 T-G Hetero INTERGENIC
SBS Chr6 21149058 C-T Hetero INTERGENIC
SBS Chr6 29390944 A-G Hetero INTERGENIC
SBS Chr7 7756952 C-T Homo INTERGENIC
SBS Chr7 10887475 G-A Homo INTERGENIC
SBS Chr7 19976216 C-A Hetero INTERGENIC
SBS Chr7 20117995 G-A Hetero INTERGENIC
SBS Chr7 20292720 T-C Hetero INTERGENIC
SBS Chr7 20826113 A-G Hetero INTERGENIC
SBS Chr8 2804495 A-C Hetero INTERGENIC
SBS Chr8 9832780 G-A Hetero INTERGENIC
SBS Chr9 6815267 A-T Hetero INTERGENIC
SBS Chr9 7100409 T-G Hetero INTERGENIC
SBS Chr9 10269644 C-T Hetero INTRON
SBS Chr9 15712287 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 19474419 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g158900
SBS Chr9 19474420 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g158900
SBS Chr9 20253444 A-C Hetero INTERGENIC
SBS Chr10 3143145 T-G Hetero UTR_3_PRIME
SBS Chr10 15599523 C-T Hetero UTR_3_PRIME
SBS Chr12 15238112 T-C Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1637001 1751000 113999 20
Deletion Chr5 5037927 5037929 2
Deletion Chr8 5290056 5290058 2
Deletion Chr2 12620620 12620628 8 OsKitaake02g141500
Deletion Chr9 17731001 17838000 106999 17
Deletion Chr2 30284340 30284346 6
Deletion Chr4 31656570 31656571 1
Deletion Chr2 33819770 33819772 2
Deletion Chr4 36225302 36225312 10 OsKitaake04g313400
Deletion Chr1 44013110 44013256 146

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 10666261 10666264 2
Insertion Chr9 1035654 1035657 2
Insertion Chr9 12250381 12250384 2
Insertion Chr5 15424490 15424492 1 OsKitaake05g118300

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14538084 14698965 OsKitaake10g091100
Inversion Chr10 14538087 14698966 OsKitaake10g091100
Inversion Chr9 17427023 17735933
Inversion Chr9 17427031 17837110 OsKitaake09g135800
Inversion Chr1 29311960 29955481
Inversion Chr1 29311965 29955491

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 23675059 Chr1 18788737 OsKitaake02g232400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17604370	T-G	Hetero	INTERGENIC
SBS	Chr2	16445369	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	2192115	T-G	Hetero	UTR_3_PRIME
SBS	Chr3	22996352	T-C	Homo	INTERGENIC
SBS	Chr4	8773808	G-A	Hetero	INTERGENIC
SBS	Chr4	10564984	C-T	Hetero	INTERGENIC
SBS	Chr5	2422636	T-C	Homo	INTRON
SBS	Chr5	11930426	T-C	Homo	INTERGENIC
SBS	Chr6	768273	G-A	Homo	INTRON
SBS	Chr6	8116029	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	13762235	T-G	Hetero	INTERGENIC
SBS	Chr6	21149058	C-T	Hetero	INTERGENIC
SBS	Chr6	29390944	A-G	Hetero	INTERGENIC
SBS	Chr7	7756952	C-T	Homo	INTERGENIC
SBS	Chr7	10887475	G-A	Homo	INTERGENIC
SBS	Chr7	19976216	C-A	Hetero	INTERGENIC
SBS	Chr7	20117995	G-A	Hetero	INTERGENIC
SBS	Chr7	20292720	T-C	Hetero	INTERGENIC
SBS	Chr7	20826113	A-G	Hetero	INTERGENIC
SBS	Chr8	2804495	A-C	Hetero	INTERGENIC
SBS	Chr8	9832780	G-A	Hetero	INTERGENIC
SBS	Chr9	6815267	A-T	Hetero	INTERGENIC
SBS	Chr9	7100409	T-G	Hetero	INTERGENIC
SBS	Chr9	10269644	C-T	Hetero	INTRON
SBS	Chr9	15712287	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	19474419	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g158900
SBS	Chr9	19474420	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g158900
SBS	Chr9	20253444	A-C	Hetero	INTERGENIC
SBS	Chr10	3143145	T-G	Hetero	UTR_3_PRIME
SBS	Chr10	15599523	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	15238112	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1637001	1751000	113999	20
Deletion	Chr5	5037927	5037929	2
Deletion	Chr8	5290056	5290058	2
Deletion	Chr2	12620620	12620628	8	OsKitaake02g141500
Deletion	Chr9	17731001	17838000	106999	17
Deletion	Chr2	30284340	30284346	6
Deletion	Chr4	31656570	31656571	1
Deletion	Chr2	33819770	33819772	2
Deletion	Chr4	36225302	36225312	10	OsKitaake04g313400
Deletion	Chr1	44013110	44013256	146

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14538084	14698965	OsKitaake10g091100
Inversion	Chr10	14538087	14698966	OsKitaake10g091100
Inversion	Chr9	17427023	17735933
Inversion	Chr9	17427031	17837110	OsKitaake09g135800
Inversion	Chr1	29311960	29955481
Inversion	Chr1	29311965	29955491

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes