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Mutant Information

Mutant Name	FN-155 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-155 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 35995753 A-T Homo INTERGENIC
SBS Chr1 37236365 T-A Homo INTRON
SBS Chr2 350331 C-A Hetero INTERGENIC
SBS Chr2 6105130 T-C Homo INTERGENIC
SBS Chr2 10254336 C-T Hetero INTERGENIC
SBS Chr2 11931263 G-A Hetero INTERGENIC
SBS Chr2 20811103 A-T Hetero INTERGENIC
SBS Chr2 20811104 C-T Hetero INTERGENIC
SBS Chr2 26008196 A-G Hetero INTRON
SBS Chr3 6269665 G-T Hetero INTERGENIC
SBS Chr3 20582484 T-C Homo INTERGENIC
SBS Chr3 20582485 C-A Homo INTERGENIC
SBS Chr3 20821414 C-T Homo INTERGENIC
SBS Chr3 26187256 C-A Hetero INTERGENIC
SBS Chr3 29090237 T-A Hetero INTERGENIC
SBS Chr3 35999971 C-A Hetero INTERGENIC
SBS Chr4 631393 A-T Hetero INTRON
SBS Chr4 2724526 C-T Homo INTERGENIC
SBS Chr4 6428878 A-C Hetero INTERGENIC
SBS Chr4 15281410 G-C Homo INTERGENIC
SBS Chr4 16198569 C-T Hetero INTRON
SBS Chr4 17172413 T-C Homo INTERGENIC
SBS Chr4 24852057 G-T Homo INTERGENIC
SBS Chr4 31123609 G-T Hetero INTERGENIC
SBS Chr4 33357806 C-T Hetero INTERGENIC
SBS Chr5 7626687 C-T Hetero INTERGENIC
SBS Chr5 10901735 A-G Hetero INTERGENIC
SBS Chr5 16643746 A-T Hetero INTERGENIC
SBS Chr6 5305130 A-G Hetero INTERGENIC
SBS Chr6 8447541 C-T Hetero INTERGENIC
SBS Chr8 5476724 G-T Hetero INTERGENIC
SBS Chr9 12415817 C-T Hetero INTERGENIC
SBS Chr10 7791587 G-A Hetero INTERGENIC
SBS Chr10 16128987 G-T Hetero INTERGENIC
SBS Chr10 17331514 C-T Hetero INTERGENIC
SBS Chr10 21288407 G-C Hetero INTERGENIC
SBS Chr10 22642941 C-A Homo INTERGENIC
SBS Chr11 118401 G-C Hetero INTERGENIC
SBS Chr11 118405 G-A Hetero INTERGENIC
SBS Chr11 11494745 C-T Homo INTERGENIC
SBS Chr11 29231641 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 222424 222426 2
Deletion Chr7 1243327 1243346 19
Deletion Chr2 2484694 2484703 9
Deletion Chr6 5878455 5878457 2
Deletion Chr3 6055698 6055712 14 OsKitaake03g086900
Deletion Chr4 6528364 6528365 1
Deletion Chr9 8251578 8251582 4 OsKitaake09g046632
Deletion Chr7 9225224 9225230 6
Deletion Chr1 9383318 9383319 1
Deletion Chr12 11478843 11478862 19
Deletion Chr2 11821464 11821499 35
Deletion Chr11 12361956 12361967 11
Deletion Chr5 13028504 13028505 1
Deletion Chr5 13275238 13275258 20
Deletion Chr7 13789708 13789712 4
Deletion Chr9 17068708 17068710 2
Deletion Chr7 17346415 17346418 3 OsKitaake07g141200
Deletion Chr4 18861376 18861378 2
Deletion Chr10 23468026 23468033 7
Deletion Chr1 23627606 23627616 10
Deletion Chr2 23643974 23643975 1
Deletion Chr1 28982000 28982001 1
Deletion Chr2 29239713 29239715 2
Deletion Chr2 34261744 34261746 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16209120 16209123 2
Insertion Chr7 2511432 2511435 2
Insertion Chr10 12017572 12017574 1
Insertion Chr12 10853863 10853868 4

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10233146 10366151 OsKitaake09g064300
Inversion Chr9 10259711 10972947
Inversion Chr9 10259716 10401534 OsKitaake09g064700
Inversion Chr9 10366159 10973014 OsKitaake09g064300
Inversion Chr3 31988056 32641052 OsKitaake03g338700
Inversion Chr3 32065302 32641043 OsKitaake03g339400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35995753	A-T	Homo	INTERGENIC
SBS	Chr1	37236365	T-A	Homo	INTRON
SBS	Chr2	350331	C-A	Hetero	INTERGENIC
SBS	Chr2	6105130	T-C	Homo	INTERGENIC
SBS	Chr2	10254336	C-T	Hetero	INTERGENIC
SBS	Chr2	11931263	G-A	Hetero	INTERGENIC
SBS	Chr2	20811103	A-T	Hetero	INTERGENIC
SBS	Chr2	20811104	C-T	Hetero	INTERGENIC
SBS	Chr2	26008196	A-G	Hetero	INTRON
SBS	Chr3	6269665	G-T	Hetero	INTERGENIC
SBS	Chr3	20582484	T-C	Homo	INTERGENIC
SBS	Chr3	20582485	C-A	Homo	INTERGENIC
SBS	Chr3	20821414	C-T	Homo	INTERGENIC
SBS	Chr3	26187256	C-A	Hetero	INTERGENIC
SBS	Chr3	29090237	T-A	Hetero	INTERGENIC
SBS	Chr3	35999971	C-A	Hetero	INTERGENIC
SBS	Chr4	631393	A-T	Hetero	INTRON
SBS	Chr4	2724526	C-T	Homo	INTERGENIC
SBS	Chr4	6428878	A-C	Hetero	INTERGENIC
SBS	Chr4	15281410	G-C	Homo	INTERGENIC
SBS	Chr4	16198569	C-T	Hetero	INTRON
SBS	Chr4	17172413	T-C	Homo	INTERGENIC
SBS	Chr4	24852057	G-T	Homo	INTERGENIC
SBS	Chr4	31123609	G-T	Hetero	INTERGENIC
SBS	Chr4	33357806	C-T	Hetero	INTERGENIC
SBS	Chr5	7626687	C-T	Hetero	INTERGENIC
SBS	Chr5	10901735	A-G	Hetero	INTERGENIC
SBS	Chr5	16643746	A-T	Hetero	INTERGENIC
SBS	Chr6	5305130	A-G	Hetero	INTERGENIC
SBS	Chr6	8447541	C-T	Hetero	INTERGENIC
SBS	Chr8	5476724	G-T	Hetero	INTERGENIC
SBS	Chr9	12415817	C-T	Hetero	INTERGENIC
SBS	Chr10	7791587	G-A	Hetero	INTERGENIC
SBS	Chr10	16128987	G-T	Hetero	INTERGENIC
SBS	Chr10	17331514	C-T	Hetero	INTERGENIC
SBS	Chr10	21288407	G-C	Hetero	INTERGENIC
SBS	Chr10	22642941	C-A	Homo	INTERGENIC
SBS	Chr11	118401	G-C	Hetero	INTERGENIC
SBS	Chr11	118405	G-A	Hetero	INTERGENIC
SBS	Chr11	11494745	C-T	Homo	INTERGENIC
SBS	Chr11	29231641	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	222424	222426	2
Deletion	Chr7	1243327	1243346	19
Deletion	Chr2	2484694	2484703	9
Deletion	Chr6	5878455	5878457	2
Deletion	Chr3	6055698	6055712	14	OsKitaake03g086900
Deletion	Chr4	6528364	6528365	1
Deletion	Chr9	8251578	8251582	4	OsKitaake09g046632
Deletion	Chr7	9225224	9225230	6
Deletion	Chr1	9383318	9383319	1
Deletion	Chr12	11478843	11478862	19
Deletion	Chr2	11821464	11821499	35
Deletion	Chr11	12361956	12361967	11
Deletion	Chr5	13028504	13028505	1
Deletion	Chr5	13275238	13275258	20
Deletion	Chr7	13789708	13789712	4
Deletion	Chr9	17068708	17068710	2
Deletion	Chr7	17346415	17346418	3	OsKitaake07g141200
Deletion	Chr4	18861376	18861378	2
Deletion	Chr10	23468026	23468033	7
Deletion	Chr1	23627606	23627616	10
Deletion	Chr2	23643974	23643975	1
Deletion	Chr1	28982000	28982001	1
Deletion	Chr2	29239713	29239715	2
Deletion	Chr2	34261744	34261746	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10233146	10366151	OsKitaake09g064300
Inversion	Chr9	10259711	10972947
Inversion	Chr9	10259716	10401534	OsKitaake09g064700
Inversion	Chr9	10366159	10973014	OsKitaake09g064300
Inversion	Chr3	31988056	32641052	OsKitaake03g338700
Inversion	Chr3	32065302	32641043	OsKitaake03g339400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes