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Mutant Information

Mutant Name	FN-156 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-156 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23209014 C-T Hetero INTERGENIC
SBS Chr1 27945045 T-A Hetero INTERGENIC
SBS Chr1 34220721 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g352600
SBS Chr1 34284720 C-A Hetero INTERGENIC
SBS Chr1 34284721 G-A Hetero INTERGENIC
SBS Chr1 43837605 G-A Hetero INTERGENIC
SBS Chr2 859811 T-A Hetero INTERGENIC
SBS Chr2 7909421 G-T Hetero INTERGENIC
SBS Chr2 11955570 G-A Hetero INTERGENIC
SBS Chr3 15695231 G-A Homo INTERGENIC
SBS Chr3 27382691 A-T Homo INTERGENIC
SBS Chr4 16850987 A-C Homo INTERGENIC
SBS Chr4 22559338 A-G Homo INTERGENIC
SBS Chr4 28353907 C-T Hetero INTERGENIC
SBS Chr4 32894900 C-T Hetero INTERGENIC
SBS Chr5 5618161 A-G Hetero INTRON
SBS Chr5 7838714 C-T Hetero INTERGENIC
SBS Chr5 19344806 T-C Homo INTERGENIC
SBS Chr6 7304607 C-T Homo INTRON
SBS Chr6 8813643 T-C Hetero INTERGENIC
SBS Chr7 8476191 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 19399661 G-A Hetero INTERGENIC
SBS Chr7 21680188 C-A Hetero INTERGENIC
SBS Chr8 4955095 A-C Hetero INTERGENIC
SBS Chr8 12345569 C-G Hetero INTERGENIC
SBS Chr9 15191399 C-T Hetero INTERGENIC
SBS Chr9 15414036 C-T Homo INTERGENIC
SBS Chr10 698027 A-C Hetero INTRON
SBS Chr10 5761523 G-C Hetero INTERGENIC
SBS Chr10 11746036 T-C Homo INTERGENIC
SBS Chr11 5956467 G-A Hetero INTERGENIC
SBS Chr11 10076325 G-A Homo INTRON
SBS Chr11 13372054 C-A Homo INTERGENIC
SBS Chr12 1727973 A-T Hetero INTRON
SBS Chr12 14204135 G-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20692 21044 352
Deletion Chr7 3782336 3782343 7
Deletion Chr12 5568184 5568185 1
Deletion Chr12 6155924 6155925 1
Deletion Chr6 6214612 6214613 1
Deletion Chr3 6264735 6264751 16
Deletion Chr5 6931418 6931421 3
Deletion Chr7 7507102 7507103 1
Deletion Chr6 7511644 7511645 1
Deletion Chr3 7963204 7963208 4
Deletion Chr7 8450599 8450601 2
Deletion Chr6 8604147 8604159 12
Deletion Chr2 8798841 8798843 2
Deletion Chr12 9329503 9329508 5
Deletion Chr3 10616132 10616133 1
Deletion Chr9 10918403 10918412 9
Deletion Chr8 12986746 12986748 2
Deletion Chr8 15289108 15289110 2
Deletion Chr10 18851425 18851440 15
Deletion Chr8 19350676 19350684 8
Deletion Chr12 20661474 20661477 3
Deletion Chr6 20997070 20997081 11
Deletion Chr11 22301437 22301442 5 OsKitaake11g176800
Deletion Chr8 22733601 22733606 5
Deletion Chr11 24038664 24038667 3
Deletion Chr3 27829242 27829248 6
Deletion Chr3 29003295 29003298 3
Deletion Chr1 29279871 29279875 4
Deletion Chr3 34444828 34444829 1
Deletion Chr4 35980725 35980728 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 20398485 20398487 1
Insertion Chr1 14631562 14631614 51

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 13361929 13700039 OsKitaake03g178500
Inversion Chr3 13361936 13700050 OsKitaake03g178500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 15188051 Chr7 12882341 OsKitaake09g106000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23209014	C-T	Hetero	INTERGENIC
SBS	Chr1	27945045	T-A	Hetero	INTERGENIC
SBS	Chr1	34220721	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g352600
SBS	Chr1	34284720	C-A	Hetero	INTERGENIC
SBS	Chr1	34284721	G-A	Hetero	INTERGENIC
SBS	Chr1	43837605	G-A	Hetero	INTERGENIC
SBS	Chr2	859811	T-A	Hetero	INTERGENIC
SBS	Chr2	7909421	G-T	Hetero	INTERGENIC
SBS	Chr2	11955570	G-A	Hetero	INTERGENIC
SBS	Chr3	15695231	G-A	Homo	INTERGENIC
SBS	Chr3	27382691	A-T	Homo	INTERGENIC
SBS	Chr4	16850987	A-C	Homo	INTERGENIC
SBS	Chr4	22559338	A-G	Homo	INTERGENIC
SBS	Chr4	28353907	C-T	Hetero	INTERGENIC
SBS	Chr4	32894900	C-T	Hetero	INTERGENIC
SBS	Chr5	5618161	A-G	Hetero	INTRON
SBS	Chr5	7838714	C-T	Hetero	INTERGENIC
SBS	Chr5	19344806	T-C	Homo	INTERGENIC
SBS	Chr6	7304607	C-T	Homo	INTRON
SBS	Chr6	8813643	T-C	Hetero	INTERGENIC
SBS	Chr7	8476191	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	19399661	G-A	Hetero	INTERGENIC
SBS	Chr7	21680188	C-A	Hetero	INTERGENIC
SBS	Chr8	4955095	A-C	Hetero	INTERGENIC
SBS	Chr8	12345569	C-G	Hetero	INTERGENIC
SBS	Chr9	15191399	C-T	Hetero	INTERGENIC
SBS	Chr9	15414036	C-T	Homo	INTERGENIC
SBS	Chr10	698027	A-C	Hetero	INTRON
SBS	Chr10	5761523	G-C	Hetero	INTERGENIC
SBS	Chr10	11746036	T-C	Homo	INTERGENIC
SBS	Chr11	5956467	G-A	Hetero	INTERGENIC
SBS	Chr11	10076325	G-A	Homo	INTRON
SBS	Chr11	13372054	C-A	Homo	INTERGENIC
SBS	Chr12	1727973	A-T	Hetero	INTRON
SBS	Chr12	14204135	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20692	21044	352
Deletion	Chr7	3782336	3782343	7
Deletion	Chr12	5568184	5568185	1
Deletion	Chr12	6155924	6155925	1
Deletion	Chr6	6214612	6214613	1
Deletion	Chr3	6264735	6264751	16
Deletion	Chr5	6931418	6931421	3
Deletion	Chr7	7507102	7507103	1
Deletion	Chr6	7511644	7511645	1
Deletion	Chr3	7963204	7963208	4
Deletion	Chr7	8450599	8450601	2
Deletion	Chr6	8604147	8604159	12
Deletion	Chr2	8798841	8798843	2
Deletion	Chr12	9329503	9329508	5
Deletion	Chr3	10616132	10616133	1
Deletion	Chr9	10918403	10918412	9
Deletion	Chr8	12986746	12986748	2
Deletion	Chr8	15289108	15289110	2
Deletion	Chr10	18851425	18851440	15
Deletion	Chr8	19350676	19350684	8
Deletion	Chr12	20661474	20661477	3
Deletion	Chr6	20997070	20997081	11
Deletion	Chr11	22301437	22301442	5	OsKitaake11g176800
Deletion	Chr8	22733601	22733606	5
Deletion	Chr11	24038664	24038667	3
Deletion	Chr3	27829242	27829248	6
Deletion	Chr3	29003295	29003298	3
Deletion	Chr1	29279871	29279875	4
Deletion	Chr3	34444828	34444829	1
Deletion	Chr4	35980725	35980728	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13361929	13700039	OsKitaake03g178500
Inversion	Chr3	13361936	13700050	OsKitaake03g178500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes