Search Kitaake

Mutant Information

Mutant Name	FN-157 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-157 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25976106 C-T Hetero INTERGENIC
SBS Chr1 25976108 C-T Hetero INTERGENIC
SBS Chr1 34996866 G-T Hetero UTR_5_PRIME
SBS Chr2 4765024 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g065900
SBS Chr2 4765025 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 32541102 G-A Homo INTERGENIC
SBS Chr3 5567742 T-A Homo INTRON
SBS Chr3 16498046 C-A Homo INTERGENIC
SBS Chr3 26429022 T-C Homo INTRON
SBS Chr3 29672188 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g309600
SBS Chr4 7881342 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 17733103 C-T Hetero INTERGENIC
SBS Chr4 17733106 A-G Hetero INTERGENIC
SBS Chr5 1872573 G-A Hetero INTERGENIC
SBS Chr5 5193725 A-C Hetero INTERGENIC
SBS Chr5 5193726 G-T Hetero INTERGENIC
SBS Chr5 15739466 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g121200
SBS Chr5 28710385 G-A Hetero INTERGENIC
SBS Chr6 13261500 C-T Homo INTERGENIC
SBS Chr6 13261501 G-T Homo INTERGENIC
SBS Chr6 13261512 G-T Homo INTERGENIC
SBS Chr6 24227002 T-A Hetero INTERGENIC
SBS Chr6 30417244 C-A Hetero INTERGENIC
SBS Chr7 6445465 A-T Hetero INTERGENIC
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr10 7444237 G-C Hetero INTERGENIC
SBS Chr10 7444241 G-A Hetero INTERGENIC
SBS Chr10 13677723 A-T Hetero INTERGENIC
SBS Chr10 17262273 C-T Hetero INTERGENIC
SBS Chr11 1569613 G-C Homo INTRON
SBS Chr11 11487586 C-T Hetero INTERGENIC
SBS Chr11 16942946 G-T Hetero INTERGENIC
SBS Chr11 21865290 T-C Hetero INTERGENIC
SBS Chr12 18864847 G-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1863622 1863625 3
Deletion Chr12 3484365 3484367 2
Deletion Chr8 3552675 3552679 4
Deletion Chr4 3625611 3625736 125
Deletion Chr2 3639944 3639951 7 OsKitaake02g052600
Deletion Chr8 4732112 4732114 2
Deletion Chr6 5780841 5780844 3
Deletion Chr2 6164833 6164845 12 OsKitaake02g083700
Deletion Chr1 6195093 6195094 1
Deletion Chr10 6273009 6273010 1
Deletion Chr7 6435001 6444000 8999
Deletion Chr9 6941489 6941491 2
Deletion Chr8 9959001 10097000 137999 6
Deletion Chr2 10266413 10266415 2
Deletion Chr1 13914351 13914352 1
Deletion Chr12 17994263 17994264 1
Deletion Chr12 18911855 18911857 2
Deletion Chr11 19625001 19675000 49999 9
Deletion Chr9 20755340 20755344 4
Deletion Chr11 22566825 22566828 3
Deletion Chr1 22567657 22567664 7
Deletion Chr4 25579145 25579146 1
Deletion Chr5 26985281 26985286 5
Deletion Chr5 27751763 27751766 3
Deletion Chr3 28001395 28001410 15
Deletion Chr3 28813665 28813675 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4437747 4437754 6
Insertion Chr7 4036415 4036419 3
Insertion Chr12 9123983 9123985 1
Insertion Chr4 16857457 16857459 1
Insertion Chr6 21904874 21904876 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6574941 6600440
Inversion Chr7 6574946 6600443

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 17370831 Chr4 8801002 OsKitaake05g133301
Translocation Chr5 17797657 Chr1 38182787 2
Translocation Chr5 29559484 Chr4 9058978 OsKitaake05g281300
Translocation Chr5 29559517 Chr4 9048106 OsKitaake05g281300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25976106	C-T	Hetero	INTERGENIC
SBS	Chr1	25976108	C-T	Hetero	INTERGENIC
SBS	Chr1	34996866	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	4765024	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g065900
SBS	Chr2	4765025	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	32541102	G-A	Homo	INTERGENIC
SBS	Chr3	5567742	T-A	Homo	INTRON
SBS	Chr3	16498046	C-A	Homo	INTERGENIC
SBS	Chr3	26429022	T-C	Homo	INTRON
SBS	Chr3	29672188	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g309600
SBS	Chr4	7881342	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	17733103	C-T	Hetero	INTERGENIC
SBS	Chr4	17733106	A-G	Hetero	INTERGENIC
SBS	Chr5	1872573	G-A	Hetero	INTERGENIC
SBS	Chr5	5193725	A-C	Hetero	INTERGENIC
SBS	Chr5	5193726	G-T	Hetero	INTERGENIC
SBS	Chr5	15739466	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g121200
SBS	Chr5	28710385	G-A	Hetero	INTERGENIC
SBS	Chr6	13261500	C-T	Homo	INTERGENIC
SBS	Chr6	13261501	G-T	Homo	INTERGENIC
SBS	Chr6	13261512	G-T	Homo	INTERGENIC
SBS	Chr6	24227002	T-A	Hetero	INTERGENIC
SBS	Chr6	30417244	C-A	Hetero	INTERGENIC
SBS	Chr7	6445465	A-T	Hetero	INTERGENIC
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr10	7444237	G-C	Hetero	INTERGENIC
SBS	Chr10	7444241	G-A	Hetero	INTERGENIC
SBS	Chr10	13677723	A-T	Hetero	INTERGENIC
SBS	Chr10	17262273	C-T	Hetero	INTERGENIC
SBS	Chr11	1569613	G-C	Homo	INTRON
SBS	Chr11	11487586	C-T	Hetero	INTERGENIC
SBS	Chr11	16942946	G-T	Hetero	INTERGENIC
SBS	Chr11	21865290	T-C	Hetero	INTERGENIC
SBS	Chr12	18864847	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1863622	1863625	3
Deletion	Chr12	3484365	3484367	2
Deletion	Chr8	3552675	3552679	4
Deletion	Chr4	3625611	3625736	125
Deletion	Chr2	3639944	3639951	7	OsKitaake02g052600
Deletion	Chr8	4732112	4732114	2
Deletion	Chr6	5780841	5780844	3
Deletion	Chr2	6164833	6164845	12	OsKitaake02g083700
Deletion	Chr1	6195093	6195094	1
Deletion	Chr10	6273009	6273010	1
Deletion	Chr7	6435001	6444000	8999
Deletion	Chr9	6941489	6941491	2
Deletion	Chr8	9959001	10097000	137999	6
Deletion	Chr2	10266413	10266415	2
Deletion	Chr1	13914351	13914352	1
Deletion	Chr12	17994263	17994264	1
Deletion	Chr12	18911855	18911857	2
Deletion	Chr11	19625001	19675000	49999	9
Deletion	Chr9	20755340	20755344	4
Deletion	Chr11	22566825	22566828	3
Deletion	Chr1	22567657	22567664	7
Deletion	Chr4	25579145	25579146	1
Deletion	Chr5	26985281	26985286	5
Deletion	Chr5	27751763	27751766	3
Deletion	Chr3	28001395	28001410	15
Deletion	Chr3	28813665	28813675	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6574941	6600440
Inversion	Chr7	6574946	6600443

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes