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Mutant Information

Mutant Name	FN-158 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-158 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5471906 A-G Hetero INTERGENIC
SBS Chr1 5888080 C-T Hetero INTERGENIC
SBS Chr1 16330394 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g175800
SBS Chr1 16387084 C-T Hetero INTERGENIC
SBS Chr1 21678962 G-A Hetero STOP_GAINED OsKitaake01g208900
SBS Chr1 21678963 G-A Hetero STOP_GAINED OsKitaake01g208900
SBS Chr2 4885435 C-G Homo INTRON
SBS Chr2 23178606 G-A Hetero INTERGENIC
SBS Chr2 24249861 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g239700
SBS Chr2 24259864 T-C Hetero INTRON
SBS Chr2 24475340 C-A Hetero INTERGENIC
SBS Chr2 24646549 C-T Hetero INTERGENIC
SBS Chr2 25108932 A-G Hetero INTERGENIC
SBS Chr2 26770883 C-T Hetero INTERGENIC
SBS Chr2 29342637 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g295200
SBS Chr3 205371 G-C Hetero INTERGENIC
SBS Chr3 13364484 A-T Hetero STOP_GAINED OsKitaake03g178500
SBS Chr3 22356675 T-C Hetero INTRON
SBS Chr4 9601494 A-G Hetero INTERGENIC
SBS Chr4 16214336 G-C Homo INTERGENIC
SBS Chr4 28826115 C-T Hetero UTR_3_PRIME
SBS Chr5 19707068 G-A Homo INTERGENIC
SBS Chr6 11761459 G-A Hetero INTERGENIC
SBS Chr6 14380639 C-T Hetero INTERGENIC
SBS Chr6 17838187 G-A Hetero INTERGENIC
SBS Chr6 23196285 G-A Hetero INTRON
SBS Chr7 21738758 A-G Hetero INTERGENIC
SBS Chr8 17041954 G-T Homo INTERGENIC
SBS Chr8 19960879 T-A Hetero INTERGENIC
SBS Chr8 20345991 C-T Hetero INTRON
SBS Chr8 24963344 G-A Hetero INTERGENIC
SBS Chr9 108308 G-A Hetero INTERGENIC
SBS Chr10 5045207 C-A Hetero INTERGENIC
SBS Chr10 5045208 C-G Hetero INTERGENIC
SBS Chr10 15846277 C-T Hetero INTRON
SBS Chr12 8279885 G-T Homo INTERGENIC
SBS Chr12 24246177 G-C Homo INTERGENIC
SBS Chr12 24809354 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 368479 368482 3
Deletion Chr9 699512 699513 1
Deletion Chr1 6369001 6429000 59999 8
Deletion Chr8 9258153 9258160 7 OsKitaake08g084600
Deletion Chr10 9652128 9652132 4
Deletion Chr8 10192266 10192333 67
Deletion Chr8 12014795 12014796 1
Deletion Chr4 13162001 13893000 730999 44
Deletion Chr6 13369457 13369466 9
Deletion Chr8 20344139 20344140 1 OsKitaake08g150300
Deletion Chr8 21368496 21368497 1
Deletion Chr2 24491548 24491556 8 OsKitaake02g243400
Deletion Chr11 24837803 24837806 3 OsKitaake11g201900
Deletion Chr12 25522474 25522506 32
Deletion Chr5 28898001 28965000 66999 13
Deletion Chr1 32308541 32308546 5
Deletion Chr3 36236974 36236980 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16194485 16194488 2
Insertion Chr4 25471341 25471348 6
Insertion Chr10 20276732 20276736 3
Insertion Chr12 18630409 18630418 8

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4425533 4987918 OsKitaake01g059100
Inversion Chr1 6357808 6369505 OsKitaake01g080400
Inversion Chr1 6357830 6426941 OsKitaake01g080400
Inversion Chr8 20700566 20781247
Inversion Chr8 20700572 20781281
Inversion Chr2 23449794 24244264 OsKitaake02g229900
Inversion Chr2 23449801 24244270 OsKitaake02g229900
Inversion Chr3 27874728 28031788
Inversion Chr3 27874729 28031772

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2146184 Chr1 24273642
Translocation Chr8 2148593 Chr1 24273638
Translocation Chr7 11498020 Chr1 6369556

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5471906	A-G	Hetero	INTERGENIC
SBS	Chr1	5888080	C-T	Hetero	INTERGENIC
SBS	Chr1	16330394	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g175800
SBS	Chr1	16387084	C-T	Hetero	INTERGENIC
SBS	Chr1	21678962	G-A	Hetero	STOP_GAINED	OsKitaake01g208900
SBS	Chr1	21678963	G-A	Hetero	STOP_GAINED	OsKitaake01g208900
SBS	Chr2	4885435	C-G	Homo	INTRON
SBS	Chr2	23178606	G-A	Hetero	INTERGENIC
SBS	Chr2	24249861	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g239700
SBS	Chr2	24259864	T-C	Hetero	INTRON
SBS	Chr2	24475340	C-A	Hetero	INTERGENIC
SBS	Chr2	24646549	C-T	Hetero	INTERGENIC
SBS	Chr2	25108932	A-G	Hetero	INTERGENIC
SBS	Chr2	26770883	C-T	Hetero	INTERGENIC
SBS	Chr2	29342637	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g295200
SBS	Chr3	205371	G-C	Hetero	INTERGENIC
SBS	Chr3	13364484	A-T	Hetero	STOP_GAINED	OsKitaake03g178500
SBS	Chr3	22356675	T-C	Hetero	INTRON
SBS	Chr4	9601494	A-G	Hetero	INTERGENIC
SBS	Chr4	16214336	G-C	Homo	INTERGENIC
SBS	Chr4	28826115	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	19707068	G-A	Homo	INTERGENIC
SBS	Chr6	11761459	G-A	Hetero	INTERGENIC
SBS	Chr6	14380639	C-T	Hetero	INTERGENIC
SBS	Chr6	17838187	G-A	Hetero	INTERGENIC
SBS	Chr6	23196285	G-A	Hetero	INTRON
SBS	Chr7	21738758	A-G	Hetero	INTERGENIC
SBS	Chr8	17041954	G-T	Homo	INTERGENIC
SBS	Chr8	19960879	T-A	Hetero	INTERGENIC
SBS	Chr8	20345991	C-T	Hetero	INTRON
SBS	Chr8	24963344	G-A	Hetero	INTERGENIC
SBS	Chr9	108308	G-A	Hetero	INTERGENIC
SBS	Chr10	5045207	C-A	Hetero	INTERGENIC
SBS	Chr10	5045208	C-G	Hetero	INTERGENIC
SBS	Chr10	15846277	C-T	Hetero	INTRON
SBS	Chr12	8279885	G-T	Homo	INTERGENIC
SBS	Chr12	24246177	G-C	Homo	INTERGENIC
SBS	Chr12	24809354	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	368479	368482	3
Deletion	Chr9	699512	699513	1
Deletion	Chr1	6369001	6429000	59999	8
Deletion	Chr8	9258153	9258160	7	OsKitaake08g084600
Deletion	Chr10	9652128	9652132	4
Deletion	Chr8	10192266	10192333	67
Deletion	Chr8	12014795	12014796	1
Deletion	Chr4	13162001	13893000	730999	44
Deletion	Chr6	13369457	13369466	9
Deletion	Chr8	20344139	20344140	1	OsKitaake08g150300
Deletion	Chr8	21368496	21368497	1
Deletion	Chr2	24491548	24491556	8	OsKitaake02g243400
Deletion	Chr11	24837803	24837806	3	OsKitaake11g201900
Deletion	Chr12	25522474	25522506	32
Deletion	Chr5	28898001	28965000	66999	13
Deletion	Chr1	32308541	32308546	5
Deletion	Chr3	36236974	36236980	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4425533	4987918	OsKitaake01g059100
Inversion	Chr1	6357808	6369505	OsKitaake01g080400
Inversion	Chr1	6357830	6426941	OsKitaake01g080400
Inversion	Chr8	20700566	20781247
Inversion	Chr8	20700572	20781281
Inversion	Chr2	23449794	24244264	OsKitaake02g229900
Inversion	Chr2	23449801	24244270	OsKitaake02g229900
Inversion	Chr3	27874728	28031788
Inversion	Chr3	27874729	28031772

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes